View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_24 (Length: 323)
Name: NF3849_low_24
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 6704797 - 6704881
Alignment:
| Q |
221 |
agcttcccattttaatctacttttggtgaaaaacacattctattaccttttcagacattcctatatatgcaatccacaatagtat |
305 |
Q |
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| T |
6704797 |
agcttcccattttaatatacttttggtgaaaaacacattctattaccttttcagacattcctatatatgcaatccacaatagtat |
6704881 |
T |
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 6704716 - 6704789
Alignment:
| Q |
114 |
ttacatgagtttgaaactcaagtaaaacagaaatggaagacaacttcctagaaatgtacttcttaccaacacat |
187 |
Q |
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| T |
6704716 |
ttacatgagtttcaaactcaaataaaacagaaatggaagacaacttccaagaaatgtacttcttaccaacacat |
6704789 |
T |
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