View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_26 (Length: 306)
Name: NF3849_low_26
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 3714185 - 3714485
Alignment:
| Q |
1 |
cataggtttcacataagcgacaaatatcatttcaacaaggttccatgtaacatgacatgacacacccttcatatcccactgtctctgtcagaaattagac |
100 |
Q |
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| T |
3714185 |
cataggtttcacataagcgacaaatatcatttcaacaaggttccatgtaacatgacatgacacacccttcatatcccactgtctctgtcagaaattagac |
3714284 |
T |
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| Q |
101 |
gctagaaagtaagatgttgattttcatacttcatattttgttacagatgtacatgcacattatcacaatttcaacagttaataatcaaatcaaatcaaat |
200 |
Q |
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| T |
3714285 |
gctagaaagtaagatgttgattttcatacttcatattttgttacagatgtacatgcacattatcacaatttcaacagttaataatc-----aaatcaaat |
3714379 |
T |
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| Q |
201 |
caatggcacttatcactttactcttaaaagtgacttacttgtgttaaagaaaccaaatcccttaaattatatactgacactttaagaaaacttattagct |
300 |
Q |
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| T |
3714380 |
cgatggcacttatcactttactcttaaaagtgacttacttgtgttaaagaaaccaaatcccttaaattatatactgacactttaagaaaacttattagct |
3714479 |
T |
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| Q |
301 |
tttacc |
306 |
Q |
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| T |
3714480 |
tttacc |
3714485 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 17032351 - 17032312
Alignment:
| Q |
43 |
ccatgtaacatgacatgacacacccttcatatcccactgt |
82 |
Q |
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| T |
17032351 |
ccatgtaacatgacaagacacacccttcataacccactgt |
17032312 |
T |
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