View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_27 (Length: 294)
Name: NF3849_low_27
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 49514309 - 49514592
Alignment:
| Q |
1 |
aaggtttattcctgacatttgggaattcaagcaggagcctatggatgttgtgacaaaggtataaaacatttgtaaatgcttagttatgctgtatgataat |
100 |
Q |
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| T |
49514309 |
aaggtttattcctgacatttgggaattcaagcaggagcctatggatgttgtgacaaaggtataaaacatttgtaaatgcttagttatgctgtatgataat |
49514408 |
T |
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| Q |
101 |
aattggttgattttaactccttccaatactcaggtacctgcgaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49514409 |
aattggttgattttaactccttccaatactcaggtacctacgaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttg |
49514508 |
T |
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| Q |
201 |
attgggaggatgatgatccctttcgcaaaaggaccttgagtcgaaaatttcctgatgagcaggtcagcactgccctagcctatg |
284 |
Q |
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| T |
49514509 |
attgggaggatgatgatccctttcgcaaaaggaccttgagtcgaaaatttactgatgagcaggtcagcactgccctagcctatg |
49514592 |
T |
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Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 27745887 - 27746169
Alignment:
| Q |
1 |
aaggtttattcctgacatttgggaattcaagcaggagcctatggatgttgtgacaaaggtataaaacatttgtaaatgcttagttatgctgtatgataat |
100 |
Q |
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|||||||||||||||| ||||||| ||||| |||||| || |||||| ||||| ||||||| |||| || | ||||||| ||||||| ||||||||| |
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| T |
27745887 |
aaggtttattcctgacttttgggagttcaaacaggagtctgaggatgtcgtgactgaggtatataacacatg-atatgcttatttatgctctatgataat |
27745985 |
T |
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| Q |
101 |
aattggttgattttaactccttccaatactcaggtacctgcgaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttg |
200 |
Q |
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||||||| ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27745986 |
aattggtatattttgactcctatcaatgctcaggtacctgcaaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgatttta |
27746085 |
T |
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| Q |
201 |
attgggaggatgatgatccctttcgcaaaaggaccttgagtcgaaaatttcctgatgagcaggtcagcactgccctagcctatg |
284 |
Q |
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|||||| |||||||| ||| ||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||| ||||| |
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| T |
27746086 |
cttgggatgatgatgacccccttcgcaaaaggaccttgagacggaaatttactgatgagcaggttagcactgccctagtctatg |
27746169 |
T |
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