View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_28 (Length: 288)
Name: NF3849_low_28
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 37 - 277
Target Start/End: Original strand, 6342997 - 6343237
Alignment:
| Q |
37 |
agatgaaaaccagaatgtgaaaaacaagcacttgattttacaaattgcaaagcatgacatgatattatgatcaatatagacaacaactgttgaacaacgg |
136 |
Q |
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| T |
6342997 |
agatgaaaaccagaatgtgaaaaacaagcacttgattttacaaattgcaaagcatgacatgatattatgatcaatatagacaacaactgttgaacaacgg |
6343096 |
T |
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| Q |
137 |
ctccttcaagaaacaattgtcctttcatcaacggtaattagaagattagattatgnnnnnnnaaccacaaaagcttctcatgcgggacaatttactttct |
236 |
Q |
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| T |
6343097 |
ctccttcaagaaacaattgtcctttcatcaacggtaattagaagattagattatgtttttttaaccacaaaagcttctcatgcgggacaatttactttct |
6343196 |
T |
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| Q |
237 |
gcttagggcagtcctataatcttttttacttaattagtatt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
6343197 |
gcttagggcagtcctataatcttttttacttaattagtatt |
6343237 |
T |
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