View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_3 (Length: 532)
Name: NF3849_low_3
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 22 - 522
Target Start/End: Original strand, 26808841 - 26809322
Alignment:
| Q |
22 |
atgcttcacagttgggctgaagaggatgttgatccttcattattcccacgtgaattgatggctaatgcttataattttgtacaagatgaggaggtaccat |
121 |
Q |
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| T |
26808841 |
atgcttcacagttgggctgaagaggacgtagatccttcattattcccacgtgaattgatggctaatgcttataattttgtacaagatgaggaggtaccat |
26808940 |
T |
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| Q |
122 |
aacctaaacgcagaaactgattatgagtattcctaaaataacatcatatttgatttccagttacattcattcttttgaaatttagaatgatatctgcttt |
221 |
Q |
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| T |
26808941 |
aacctaaacgcagatactgattatgagtattcctaaaataacatcatatttgctttccagttacattcattcttttgaaatttagaatgatatctgcttt |
26809040 |
T |
|
| Q |
222 |
tttgtctttaaattttgagctgtaattcaataagaatggctatatgcgtgttgtttggtaacaaagtaacagacatgtttatttgttgaatattggtgga |
321 |
Q |
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| T |
26809041 |
tttgtctttaa-------------------taagaatggctatatgcgtgttgtttggtaacaaagtaacagacatgtttatttgttgaatattggtgga |
26809121 |
T |
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| Q |
322 |
ttttgcaggtgaataatgatcctcagagtcttataaggaaagcacatgctgctacattctctacaggctcagcaactgtgtaagtttatcctcttttatt |
421 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26809122 |
ttttgcaggtgaataatgatcctcagattcttataaggaaagcacatgctgctacattctctacaggctcagcaactgtgtaagtttatcctcttttatt |
26809221 |
T |
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| Q |
422 |
taggttgccaatttggagtgaaaagatcaaacattgatatgcattttaatttttaaactattctaccacaatatatatgcctcagcaatttcttgtctgt |
521 |
Q |
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| T |
26809222 |
taggttgccaatttggagtaaaaagatcaaacattgatatgcattttaatttttaaactattctaccacaatatatatgcctcaacaatttcttgtctgt |
26809321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 406 - 522
Target Start/End: Original strand, 40841610 - 40841726
Alignment:
| Q |
406 |
tttatcctcttttatttaggttgccaatttggagtgaaaagatcaaacattgatatgcattttaatttttaaactattctaccacaatatatatgcctca |
505 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841610 |
tttatcctcttttatttaggttgccaatttgggataaaaagatcaaacattgatatgcattttaatttttaaactattctaccacaatatatatgcctca |
40841709 |
T |
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| Q |
506 |
gcaatttcttgtctgtg |
522 |
Q |
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| T |
40841710 |
accatttcttgtctgtg |
40841726 |
T |
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