View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_30 (Length: 274)
Name: NF3849_low_30
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 25 - 268
Target Start/End: Complemental strand, 46107878 - 46107633
Alignment:
| Q |
25 |
gtgctagggatggcagaacgaacaacaaaaggattccacgtgatgcagggcttttgggagagtgttcgggaatgagactgtcattgtccttacttctggc |
124 |
Q |
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| T |
46107878 |
gtgctagggatggcagaacgaacaacaaaaggattccacgtgatgcagggcttttgggagagtgttcgggaatgagactgtcattgtccttacttctggc |
46107779 |
T |
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| Q |
125 |
ggctgtgcctttaaatcaaaattgatgatgtagccaaaattaagtgagaggaggaaaacctattat--atattcccttaatacttaatgtgagagaaaat |
222 |
Q |
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| T |
46107778 |
ggctgtgcctttaaatcaaaattgatgatgtagccaaaattaagtgagaggaggaaaacctattatatatattcccttaatacttaatgtgaaagaaaat |
46107679 |
T |
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| Q |
223 |
taacaagagaaatcatgtttaatttttggtgttttgtgatgatgtc |
268 |
Q |
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| T |
46107678 |
taacaagagaaatcatgtttaatttttggtgttttgtgatggtgtc |
46107633 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 22539378 - 22539469
Alignment:
| Q |
45 |
aacaacaaaaggattccacgtgatgcagggcttttgggagagtgttcgggaatgagactgtcattgtccttacttctggcggctgtgccttt |
136 |
Q |
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| T |
22539378 |
aacaacagatggtttccacgtgatgcgggcctttatgaagagagtacaagaatgggactgtcattgtccttacttgtggcggctgtgccttt |
22539469 |
T |
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