View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3849_low_31 (Length: 269)
Name: NF3849_low_31
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_31 |
 | |
|
| [»] scaffold0339 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 47276851 - 47276980
Alignment:
| Q |
88 |
aaattttaacgttgttgcatgttcaaattcaaaatagaactcga-gactgtggttaagcctataaatactaataaagattattgtcaagaaacccaaaca |
186 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||| | |||| ||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47276851 |
aaattttaacattgtttcatgttcaaattcaaaatagaactcaaagactttggttaagcttataaatacttgtaaagattattgtcaagaaacccaaaca |
47276950 |
T |
|
| Q |
187 |
aacaagtctttagctatctttattgatttc |
216 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |
|
|
| T |
47276951 |
aacaagtcattaactatctttattgatttc |
47276980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 47264494 - 47264622
Alignment:
| Q |
88 |
aaattttaacgttgttgcatgttcaaattcaaaatagaactcgagactgtggttaagcctataaatactaataaagattattgtcaagaaacccaaacaa |
187 |
Q |
| |
|
|||||||||||||||||| | |||||| |||| || ||||| |||| | |||||||| |||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
47264494 |
aaattttaacgttgttgcttattcaaactcaagatggaacttgagattttggttaagtctataaatccttgtaaagattattgtcaagaagtccaaacaa |
47264593 |
T |
|
| Q |
188 |
acaagtctttagctatctttattgatttc |
216 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
47264594 |
acaagtctttagctatctttatcgatttc |
47264622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 47276744 - 47276816
Alignment:
| Q |
18 |
agttagtttacatatttgtttagggttaagtttaatatcaactatgtgcaactacgaagactaacccctcaaat |
91 |
Q |
| |
|
||||||||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47276744 |
agttagtttacattttt-tttaaggataagtttaatatcaactatgtgcaactacgaagactaacccctcaaat |
47276816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 47264415 - 47264461
Alignment:
| Q |
48 |
tttaatatcaactatgtgcaactacgaagactaacccctcaaatttt |
94 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||| ||||||| |
|
|
| T |
47264415 |
tttaatatcaaccgtgtgcaactacgaaaactaaccccttaaatttt |
47264461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 5969 - 6041
Alignment:
| Q |
18 |
agttagtttacatatttgtttagggttaagtttaatatcaactatgtgcaactacgaagactaacccctcaaat |
91 |
Q |
| |
|
||||||||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5969 |
agttagtttacattttt-tttaaggataagtttaatatcaactatgtgcaactacgaagactaacccctcaaat |
6041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 6076 - 6117
Alignment:
| Q |
88 |
aaattttaacgttgttgcatgttcaaattcaaaatagaactc |
129 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
6076 |
aaattttaacattgtttcatgttcaaattcaaaatagaactc |
6117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University