View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_36 (Length: 247)
Name: NF3849_low_36
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 8754023 - 8754239
Alignment:
| Q |
20 |
tctgacactctaaacaattctcctattggatttgcacaattatttctctatagtttctgagtactttgaaatttttaagggtgatcttaagtacttattc |
119 |
Q |
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| T |
8754023 |
tctgacactctaaacaattctcctattggatttgcacaattatttctctattgtttctgagtactttgaaatttttaagggtgatcttaagtacttattc |
8754122 |
T |
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| Q |
120 |
taattagctccattcatcgaggtgttgatttttccttggcttcaaaacccagccataaacgcaagttcaacaaatttgaagtgaagacacatgaaatatt |
219 |
Q |
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| T |
8754123 |
taattagctccattcatcgaggtgttgatttttccttggcttcaaaacccagccataaacgcaagtttaacaaattttaagtgaagacacatcaaatatt |
8754222 |
T |
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| Q |
220 |
ccacaagtcacattcat |
236 |
Q |
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| T |
8754223 |
ccacaagtcacattcat |
8754239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 8744765 - 8744955
Alignment:
| Q |
25 |
cactctaaacaattctcctattggatttgcacaattatttctctatagtttctgagtactttgaaatttttaagggtgatcttaa----------gtact |
114 |
Q |
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| T |
8744765 |
cactcttaacaattttcctattagatttgtacaattatttctcaattctttatgagtattttgaaattgttaagggtgatcttgaaatgggtttagttct |
8744864 |
T |
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| Q |
115 |
tattctaattagctccattcatcgaggtgttgatttttccttggcttcaaaacccagccataaacgcaagttcaacaaatttgaagtgaag |
205 |
Q |
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| T |
8744865 |
tattgtaattagcatcattcatcatggtgttgattttttcttggtttcaaaacctagccataaacgcaagtttgacaaatttgaagtgaag |
8744955 |
T |
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