View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3849_low_42 (Length: 224)

Name: NF3849_low_42
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3849_low_42
NF3849_low_42
[»] chr4 (3 HSPs)
chr4 (53-211)||(44185462-44185620)
chr4 (19-211)||(4875982-4876189)
chr4 (76-177)||(1326462-1326563)
[»] chr3 (1 HSPs)
chr3 (19-211)||(5387574-5387781)
[»] scaffold0831 (2 HSPs)
scaffold0831 (78-166)||(2047-2135)
scaffold0831 (19-81)||(2146-2209)
[»] chr8 (4 HSPs)
chr8 (90-167)||(26531587-26531664)
chr8 (32-83)||(27183114-27183166)
chr8 (32-83)||(27231119-27231171)
chr8 (27-81)||(26531509-26531564)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 44185462 - 44185620
Alignment:
Q  53 tgtgctccaaatcatggtctcttttatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaa 152  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44185462 tgtgctccaaatcatggtctcttttatttcatgcaattgttccacaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaa 44185561  T
Q  153 atattaaggagatatcaccacatcctcgagacggtttcaatctgtatttgctctctgct 211  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  44185562 atattaaggagatatcgccacatcctcgagacggttccaatctgtatttgctctctgct 44185620  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 4875982 - 4876189
Alignment:
Q  19 caaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttatttca--------------tgcaattgttccgcaccaat 103  Q
    ||||||||||||| ||||||||||| ||||||| ||||| |||||||||| |||||||||||||||              || |  ||||||||||||||    
T  4875982 caaattacccctccaatctctcaattgatttacatgtgcctccaaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaat 4876081  T
Q  104 ttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcaccacatcctcgagacggtttcaatctgtatttgc 203  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||  |||||||| |||||||||| ||||||||||||||    
T  4876082 ttcatatctatgcatcgatcattgtacgatcacacttatctctttctaaatattaaggagatattgccacatccacgagacggttccaatctgtatttgc 4876181  T
Q  204 tctctgct 211  Q
    ||||||||    
T  4876182 tctctgct 4876189  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 1326462 - 1326563
Alignment:
Q  76 ttatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcaccacat 175  Q
    |||||||||||   |||| |||||||||||||||||||||||| | ||| |||||||| |||| ||||||||||| ||||| ||||||||||  ||||||    
T  1326462 ttatttcatgcctatgtttcgcaccaatttcatatctatgcattgttcactgtacaatgacacatatctcttccttaatataaaggagatattgccacat 1326561  T
Q  176 cc 177  Q
    ||    
T  1326562 cc 1326563  T

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Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 5387574 - 5387781
Alignment:
Q  19 caaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt--------------catgcaattgttccgcaccaat 103  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||              ||||||||||||||||||||||    
T  5387574 caaattacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaat 5387673  T
Q  104 ttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcaccacatcctcgagacggtttcaatctgtatttgc 203  Q
    ||||||| ||||||||||||||||||  ||||||||| |||| ||||| |||| ||||||||||  |||||||||| ||| |||| ||||||||||||||    
T  5387674 ttcatatttatgcatcgctcattgtatgatcacacctttctcatcctatatataaaggagatattgccacatcctcaagatggttccaatctgtatttgc 5387773  T
Q  204 tctctgct 211  Q
    ||||||||    
T  5387774 tctctgct 5387781  T

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Target: scaffold0831 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 2135 - 2047
Alignment:
Q  78 atttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagata 166  Q
    |||||||| || |||| |||| ||||||||||| ||||||||| |||||||||||| |||| | ||| ||||||||||| |||||||||    
T  2135 atttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatgacacatgtcttttcctaaatataaaggagata 2047  T

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Target: scaffold0831; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 2209 - 2146
Alignment:
Q  19 caaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt 81  Q
    |||| |||| || ||||||||||| |||||||||||||| | ||| ||||||||||||||||||    
T  2209 caaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttattt 2146  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 26531587 - 26531664
Alignment:
Q  90 tgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatat 167  Q
    |||||||||  |||||||||||||||||||  |||||||||||  |||| |||||||| |||||||| ||||||||||    
T  26531587 tgttccgcaaaaatttcatatctatgcatcagtcattgtacaacaacacttatctctttctaaatataaaggagatat 26531664  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 27183114 - 27183166
Alignment:
Q  32 aaatctctcaatcgatttacttgtgct-ccaaatcatggtctcttttatttca 83  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  27183114 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttca 27183166  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 27231171 - 27231119
Alignment:
Q  32 aaatctctcaatcgatttacttgtgct-ccaaatcatggtctcttttatttca 83  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  27231171 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttca 27231119  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 26531509 - 26531564
Alignment:
Q  27 ccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt 81  Q
    |||||||||||||||| || ||||||||||| | ||||||||||||||||||||||    
T  26531509 ccctcaaatctctcaagcggtttacttgtgcgtgcaaatcatggtctcttttattt 26531564  T

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