View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3849_low_5 (Length: 492)
Name: NF3849_low_5
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 147 - 492
Target Start/End: Original strand, 47851806 - 47852151
Alignment:
| Q |
147 |
ctaaaattgaaagataaacaatctctcatacaataagaaatatagcgcagaagatgaaaatgatgtatgatacgactttaatttttctgaaaacttcaac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47851806 |
ctaaaattgaaagataaacaatctctcatacaataagaaatatagcgcagaagatgaaaatgatgtatgatacgactttaatttttctgaaaacttcaac |
47851905 |
T |
|
| Q |
247 |
attaaaaattctttcggtnnnnnnnnntcaactaacaataacttaatgaaagactattcatatttattatgtatatatcagaaagattggtcgtaattca |
346 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47851906 |
attaaaaattctttcggtaaaaaaaaatcaactaacaataacttaatgaaagactattcatatttattatgtatatatcagaaagattggtcgtaattca |
47852005 |
T |
|
| Q |
347 |
gatagaaaccagaaagcaacaaaatgcagaatgtttatgatgtctcataatcatatagtagccacaaagattaaacgattatggtataatactacctact |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47852006 |
gatagaaaccagaaagcaacaaaatgcagaatgtttatgatgtctcataatcataaagtagccacaaagattaaacgattatggtataatactacctgat |
47852105 |
T |
|
| Q |
447 |
aacccaaatcactgcccatttcattgacactttttatagtgattcc |
492 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| | |||||||| |
|
|
| T |
47852106 |
aacccaaatcactgccaatttcaatgacactttttcttgtgattcc |
47852151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University