View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3849_low_6 (Length: 478)
Name: NF3849_low_6
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3849_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 16974597 - 16975046
Alignment:
| Q |
18 |
aatcatactgtcaatcaaatatcatatatcaactttcattcactacaatgccttctacaactttcactgtgcgttcggagtctagttttagtttagcaag |
117 |
Q |
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| T |
16974597 |
aatcatactgtcaatcaaatatcatatatcaactttcattcactacaatgccttctacaaatttcactgtgcgttcggagtctggttttagtttagcaag |
16974696 |
T |
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| Q |
118 |
agacaagctacacatcaaaggccttcagaatgcatcctacaacttgtcttgtggttgcgatgctgattccgctccacatcaaattctcgagcctcacaga |
217 |
Q |
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| T |
16974697 |
agacaagctatacatcaaaggccttcagaatacctcctacaacttgtcttgtggttgcgatgctgattccgctccacatcaaattctcgagcctcagaga |
16974796 |
T |
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| Q |
218 |
gatctcgagggttttgagatgagcggttatggagaagtaaatatttcaaactggatgataaatatttctaccaagtgcagaaactgtcgtcaacttcctc |
317 |
Q |
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| T |
16974797 |
ggtctcgagggttttaagatgagcagttatggagaagtaaatatttcaaactggatgataaatatttctaccaagtgcagaaactgtcgtcaacttcctc |
16974896 |
T |
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| Q |
318 |
gacttggtagtttaaccactctttatctatctcaaatgagaaccgaaggagtagagtttctttcacaactttctgaattaagcattaaggccggtatccc |
417 |
Q |
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| T |
16974897 |
gacttggtagtttaaccactctttatctatctcaaatgagaaccgaaggagtagagtttctttcacaactttctgaattaagcattaaggccggtatccc |
16974996 |
T |
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| Q |
418 |
tcagcctgaattgccattcctttcctctgtagaaactgcagatgatgatg |
467 |
Q |
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| T |
16974997 |
tcagcctgaattgccattcctttcctctgtagaaactgcagacgatgatg |
16975046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 16911182 - 16911221
Alignment:
| Q |
48 |
aactttcattcactacaatgccttctacaactttcactgt |
87 |
Q |
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| T |
16911182 |
aactttcattcactacaatgccttctacaactttcactgt |
16911221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 16916386 - 16916425
Alignment:
| Q |
48 |
aactttcattcactacaatgccttctacaactttcactgt |
87 |
Q |
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| T |
16916386 |
aactttcattcactacaatgccttctacaactttcactgt |
16916425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 16966228 - 16966277
Alignment:
| Q |
44 |
tatcaactttcattcactacaatgccttctacaactttcactgtgcgttc |
93 |
Q |
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| T |
16966228 |
tatcaactttcattcacaacaatgccttctataactttcaccatgcgttc |
16966277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 17068478 - 17068450
Alignment:
| Q |
121 |
caagctacacatcaaaggccttcagaatg |
149 |
Q |
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| T |
17068478 |
caagctacacatcaaaggccttcagaatg |
17068450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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