View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3849_low_7 (Length: 462)

Name: NF3849_low_7
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3849_low_7
NF3849_low_7
[»] chr7 (46 HSPs)
chr7 (16-241)||(21681249-21681476)
chr7 (13-238)||(21627746-21627972)
chr7 (13-123)||(21740671-21740781)
chr7 (98-237)||(21991458-21991596)
chr7 (22-142)||(21704307-21704426)
chr7 (13-241)||(21689035-21689256)
chr7 (306-399)||(21651991-21652084)
chr7 (84-240)||(21622745-21622893)
chr7 (13-241)||(21791645-21791866)
chr7 (13-237)||(21713825-21714048)
chr7 (309-399)||(21714108-21714198)
chr7 (306-417)||(21628047-21628158)
chr7 (307-417)||(21788152-21788262)
chr7 (306-399)||(21763987-21764077)
chr7 (165-231)||(21791512-21791578)
chr7 (306-399)||(21771883-21771976)
chr7 (306-399)||(21725818-21725911)
chr7 (165-241)||(21639468-21639544)
chr7 (165-241)||(21663875-21663951)
chr7 (165-240)||(21651859-21651934)
chr7 (165-231)||(21788002-21788068)
chr7 (165-241)||(21704425-21704499)
chr7 (306-399)||(21704565-21704658)
chr7 (15-87)||(21651734-21651806)
chr7 (13-82)||(21784566-21784635)
chr7 (13-73)||(21663698-21663758)
chr7 (13-81)||(21725571-21725639)
chr7 (306-417)||(21992092-21992206)
chr7 (306-365)||(21741028-21741087)
chr7 (23-78)||(21784691-21784746)
chr7 (306-399)||(21664017-21664113)
chr7 (23-81)||(21771645-21771703)
chr7 (306-399)||(21785325-21785421)
chr7 (361-440)||(21646720-21646799)
chr7 (14-69)||(21991408-21991463)
chr7 (165-202)||(21771759-21771796)
chr7 (165-202)||(21785163-21785200)
chr7 (356-399)||(15713595-15713638)
chr7 (14-65)||(21622693-21622744)
chr7 (356-399)||(21681622-21681665)
chr7 (306-424)||(21808273-21808394)
chr7 (38-76)||(21787911-21787949)
chr7 (165-202)||(21725694-21725731)
chr7 (13-99)||(21639321-21639404)
chr7 (13-47)||(21791419-21791453)
chr7 (166-202)||(21740895-21740931)
[»] scaffold0182 (4 HSPs)
scaffold0182 (306-399)||(25232-25325)
scaffold0182 (13-81)||(34209-34277)
scaffold0182 (306-364)||(34456-34514)
scaffold0182 (165-202)||(34332-34369)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 21681249 - 21681476
Alignment:
Q  16 agcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaacaa 115  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| |||||||| |||    
T  21681249 agcaaagatccaatttccatgaattttacttttcttgtccattgagtaaagtgatagacattatatagtttgttctgaggacaagttgctttagtagcaa 21681348  T
Q  116 agaggacaggtataaaaaatatattaaagtgaagtgtaaca--nnnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaa 213  Q
    |||||||||||||||||||| |||||||||||||||| | |          |||||||||||||||||||||||||| |||||||||||||||||||| |    
T  21681349 agaggacaggtataaaaaatctattaaagtgaagtgtgagattttttttttaagcaagcatatttacttatcttgtttattaggtaaaggtttgagagca 21681448  T
Q  214 tgaaaatctaaagcactacactgagccc 241  Q
    |||||| |||||||||||| ||||||||    
T  21681449 tgaaaaactaaagcactaccctgagccc 21681476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 21627746 - 21627972
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 112  Q
    |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |     
T  21627746 aaaagcaacgatcctatttccatgaattttacttttcttgtccgttgagtaaagtgatggacattatatagtttgttctgaggacaagttactttagcag 21627845  T
Q  113 caaagaggacaggtataaaaaatatattaaag-tgaagtgtaaca-nnnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgaga 210  Q
      |||||||||||||| ||||||  ||||||| |||||||||| |         |||||||||||||||||||||||| |||||||||||||||||||||    
T  21627846 tgaagaggacaggtat-aaaaattgattaaagttgaagtgtaagattttgttttaagcaagcatatttacttatcttgctcattaggtaaaggtttgaga 21627944  T
Q  211 gaatgaaaatctaaagcactacactgag 238  Q
    | ||||||||||||||||||||||||||    
T  21627945 gcatgaaaatctaaagcactacactgag 21627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 21740671 - 21740781
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  21740671 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagtgatggacattatatagtttgttatgaggacaagttactttagtaa 21740770  T
Q  113 caaagaggaca 123  Q
    |||||||||||    
T  21740771 caaagaggaca 21740781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 21991458 - 21991596
Alignment:
Q  98 aagttactttagtaacaaagaggacaggtataaaaaatatattaaagtgaagtgtaacannnnnnngaagcaagcatatttacttatcttgttcattagg 197  Q
    ||||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  21991458 aagttactttagtagtaaagaggacaagtataaaaaatctattaaagtgaagtgtaacattttttt-aagcaagcatatttacttatcttgttcattagg 21991556  T
Q  198 taaaggtttgagagaatgaaaatctaaagcactacactga 237  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  21991557 taaaggttcgagagaatgaaaatctaaagcactacactga 21991596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 21704307 - 21704426
Alignment:
Q  22 gatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaacaaagagga 121  Q
    |||||| |||||  |||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  21704307 gatcctgtttccgagaattttacttttcttgtacattgagtaaagtgatggacattatata-tttgttctgaggacaagttactttagtaacaaagagga 21704405  T
Q  122 caggtataaaaaatatattaa 142  Q
    |||||||||||||||||||||    
T  21704406 caggtataaaaaatatattaa 21704426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 21689035 - 21689256
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 112  Q
    ||||||||  |||| ||||||||||||||||||||||||  ||||||||| ||||  ||||| |    ||||| | || ||| |||||||||||||| |     
T  21689035 aaaagcaaatatcccttttccatgaattttacttttcttccccattgagttaagtggtggacgtg---tagttcgttccgagaacaagttactttagcag 21689131  T
Q  113 caaagaggacaggtataaaaaatatattaaagtg-aagtgtaacannnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgagag 211  Q
      |||||||||||||||||||  || |||||||| |||||||| |        |||||||||||||||||||||||||||||||||||||||||||||||    
T  21689132 tgaagaggacaggtataaaaatcat-ttaaagtggaagtgtaatatttt----aagcaagcatatttacttatcttgttcattaggtaaaggtttgagag 21689226  T
Q  212 aatgaaaatctaaagcactacactgagccc 241  Q
     |||||||||||||||||||||||||||||    
T  21689227 catgaaaatctaaagcactacactgagccc 21689256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 21651991 - 21652084
Alignment:
Q  306 aatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  21651991 aatgatggcatcccaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaacaccccaaaattcacgaccaaagatacaaagggtg 21652084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 21622745 - 21622893
Alignment:
Q  84 tttgctctgaggacaagttactttagtaacaaagaggacaggtataaaaaatatattaaagtgaagtgtaacannnnnnngaagcaagcatatttactta 183  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |        |||         |||||||    
T  21622745 tttgttctgaggacaagttactttagtaaaaaagaggacaggtataaaaaatctattaaagtgaagtgtgagatttttttaaagg--------ttactta 21622836  T
Q  184 tcttgttcattaggtaaaggtttgagagaatgaaaatctaaagcactacactgagcc 240  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21622837 tcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcactacactgagcc 21622893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 21791645 - 21791866
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 112  Q
    ||||||||  |||| |||||||||||||||||||||||| |||||||||| || |  ||||| |    ||||| | || ||| |||||||||||||| |     
T  21791645 aaaagcaaatatcccttttccatgaattttacttttcttctccattgagttaactggtggacgtg---tagttcgttccgagaacaagttactttagcag 21791741  T
Q  113 caaagaggacaggtataaaaaatatattaaagtg-aagtgtaacannnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgagag 211  Q
      |||||||||||||||||||  | ||||||||| |||||||| |        |||||||||||||||||||||||||||| ||||||||||||||| ||    
T  21791742 tgaagaggacaggtataaaaatca-attaaagtggaagtgtaatatttt----aagcaagcatatttacttatcttgttcagtaggtaaaggtttgaaag 21791836  T
Q  212 aatgaaaatctaaagcactacactgagccc 241  Q
     |||||||||||||||||||||||||||||    
T  21791837 catgaaaatctaaagcactacactgagccc 21791866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 21713825 - 21714048
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 112  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||   |||||   |||||||| | || |||||||||||||||||| |     
T  21713825 aaaagcaaagatcttttttccatgaattttacttttcttgtccattgagtaaagcggtggac---atatagttcgttccgaggacaagttactttagcag 21713921  T
Q  113 caaagaggacaggtataaaaaatatattaaagt-gaagtgta--acannnnnnngaagcaagcatatttacttatcttgttcattaggtaaaggtttgag 209  Q
      ||||||||| |||| |||||| ||||||||| ||| | ||  | |        ||| ||||| ||||||||| |||||||||||||||||||||||||    
T  21713922 tgaagaggacaagtat-aaaaatttattaaagtcgaaatttaagatagtttttttaagaaagcagatttacttaacttgttcattaggtaaaggtttgag 21714020  T
Q  210 agaatgaaaatctaaagcactacactga 237  Q
    || |||||||| ||||||||||||||||    
T  21714021 agcatgaaaatttaaagcactacactga 21714048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 21714108 - 21714198
Alignment:
Q  309 gatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| |||||||| ||||||    
T  21714108 gatggcatcccaaactattaaagaaaaatttgtggagctacaaaaatcaatgcaaacaccccaaaattcacgaccgaagatacaaagggtg 21714198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 306 - 417
Target Start/End: Original strand, 21628047 - 21628158
Alignment:
Q  306 aatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtgacagat 405  Q
    ||||||||||||||||||||||||||||||||||||| || || || | |||||||||||||||| |||| |||||||||||||||| |||||| | |||    
T  21628047 aatgatggcatcccaaactattaaagaaaaatttgtggagttaaaaaattcaaagcaaacaccccgaaatgcacgaccaaagatacaaagggtggccgat 21628146  T
Q  406 catctcaaaaat 417  Q
    ||||||| ||||    
T  21628147 catctcagaaat 21628158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 307 - 417
Target Start/End: Original strand, 21788152 - 21788262
Alignment:
Q  307 atgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtgacagatc 406  Q
    ||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||| || ||||| |||||| ||||      
T  21788152 atgatggcatcccaaactattaatgaaaaatttgtggagttacaaaaatcaaagcaaacaccccaaaattcacgaccgaaaatacaaagggtggcagagt 21788251  T
Q  407 atctcaaaaat 417  Q
    |||||| ||||    
T  21788252 atctcagaaat 21788262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 21763987 - 21764077
Alignment:
Q  306 aatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||| |||||||| ||||||    
T  21763987 aatgatggcatcccaaactcttaaagaaaaatttgtggagctacaa---tcaaagcaaacaccccaaaattcacgacccaagatacaaagggtg 21764077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 21791512 - 21791578
Alignment:
Q  165 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaatgaaaatctaaagcacta 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21791512 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagcatgaaaatctaaagcacta 21791578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 21771883 - 21771976
Alignment:
Q  306 aatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||| |||| |||||||| ||||||    
T  21771883 aatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaataccccaaaattcaagaccgaagatacaaagggtg 21771976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 21725818 - 21725911
Alignment:
Q  306 aatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||| | ||||||||||| |||| |||||||| ||||||    
T  21725818 aatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaatatcccaaaattcaagaccgaagatacaaagggtg 21725911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 21639468 - 21639544
Alignment:
Q  165 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaatgaaaatctaaagcactacactgagccc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||  |||| |||||||| ||||||||||||||||||||    
T  21639468 aagcaagcatatttacttatcttgttcattaggtaaagtttcaagagcatgaaaatttaaagcactacactgagccc 21639544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 21663875 - 21663951
Alignment:
Q  165 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaatgaaaatctaaagcactacactgagccc 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||| |||| |||||||    
T  21663875 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaaaaaaaatccaaagcagtacagtgagccc 21663951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 21651859 - 21651934
Alignment:
Q  165 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaatgaaaatctaaagcactacactgagcc 240  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||| ||||||||||||||||    
T  21651859 aagcaagcatatttacttatcttgttaattaggtaaaggtttgtgagcatggaaatctagagcactacactgagcc 21651934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 21788002 - 21788068
Alignment:
Q  165 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaatgaaaatctaaagcacta 231  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  21788002 aagcaagcatatttagttatcttgttcattaggtaaaggtttgagagcatgaaaaactaaagcacta 21788068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 21704425 - 21704499
Alignment:
Q  165 aagcaagcatatttacttatcttgttcattaggtaaaggtttgagagaatgaaaatctaaagcactacactgagccc 241  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||    
T  21704425 aagcaagcatatttagttatcttgttcattaggtaaaggttt--gagaatgaaaaactaaagcactacgctgagccc 21704499  T

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Target: chr7; HSP #23
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 21704565 - 21704658
Alignment:
Q  306 aatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    ||||||||||||||||||||||||||||||||||||  || || || | |||||||||||||| | |||| |||||||||||||||| ||||||    
T  21704565 aatgatggcatcccaaactattaaagaaaaatttgtcgagttaaaaaattcaaagcaaacacctccaaatgcacgaccaaagatacaaagggtg 21704658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 21651734 - 21651806
Alignment:
Q  15 aagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttg 87  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||    
T  21651734 aagcaaagatcctttttccatgaattttacatttcttgtccattgagtaaagtggtagacattatatagtttg 21651806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 21784566 - 21784635
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatata 82  Q
    ||||||||  ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  21784566 aaaagcaaatatcctttttccgtgaattttacttttcttgtccaatgagtaaagtgatggacattatata 21784635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 21663698 - 21663758
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatgga 73  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  21663698 aaaagcaatgatcctatttccatgaattttacttttcttgtccattgagcaaagtgatgga 21663758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 21725571 - 21725639
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatat 81  Q
    ||||||||  ||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||    
T  21725571 aaaagcaaatatcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 21725639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 417
Target Start/End: Original strand, 21992092 - 21992206
Alignment:
Q  306 aatgatggcatcccaaacta---ttaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtgaca 402  Q
    |||||||||||||||||||    || |||||||| ||||| ||||| || | |||||||||| |||||||||||||||| || ||||||| |||||| ||    
T  21992092 aatgatggcatcccaaacttcccttgaagaaaaaattgtggagctagaaaattcaaagcaaataccccaaaattcacgaacacagatacaaagggtggca 21992191  T
Q  403 gatcatctcaaaaat 417  Q
    ||  |||||||||||    
T  21992192 gagtatctcaaaaat 21992206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 21741028 - 21741087
Alignment:
Q  306 aatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaac 365  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||    
T  21741028 aatgatggcatcccaaactattaaagaaaaaattgtggagctacaaaaattaaagcaaac 21741087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 21784691 - 21784746
Alignment:
Q  23 atcctttttccatgaattttacttttcttgtccattgagtaaagttatggacatta 78  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  21784691 atcctttttccgtgaattttacttttcttgtccattgagtaaagtgatgaacatta 21784746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 21664017 - 21664113
Alignment:
Q  306 aatgatggcatcccaaacta---ttaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    ||||||||||||||||||||   || || ||||| ||||| ||||| || | |||||||||| |||||||| |||||||||||||||||| ||||||    
T  21664017 aatgatggcatcccaaactacccttgaaaaaaaaattgtggagctagaaaattcaaagcaaataccccaaagttcacgaccaaagatacaaagggtg 21664113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 21771645 - 21771703
Alignment:
Q  23 atcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatat 81  Q
    ||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||    
T  21771645 atcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 21771703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 21785325 - 21785421
Alignment:
Q  306 aatgatggcatcccaaacta---ttaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    ||||||| ||||||||||||   || || ||||| ||||| ||||| || | |||||||||| ||||||||||||||||||||||||||| ||||||    
T  21785325 aatgatgacatcccaaactacccttgaaaaaaaaattgtggagctagaaaattcaaagcaaataccccaaaattcacgaccaaagatacaaagggtg 21785421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 21646720 - 21646799
Alignment:
Q  361 caaacaccccaaaattcacgaccaaagatacagagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcatta 440  Q
    |||||||||||||||||||||||||||||||| |||||| || |  |||||| |||| ||||||  ||||||| ||||||    
T  21646720 caaacaccccaaaattcacgaccaaagatacaaagggtgccacagtatctcagaaatagaacaaaatttgaggagcatta 21646799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 21991408 - 21991463
Alignment:
Q  14 aaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagtta 69  Q
    |||||||  ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  21991408 aaagcaaatatcctttttccatgaatttcacttttcttgtctattgagtaaagtta 21991463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 21771759 - 21771796
Alignment:
Q  165 aagcaagcatatttacttatcttgttcattaggtaaag 202  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21771759 aagcaagcatatttacttatcttgttcattaggtaaag 21771796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 21785163 - 21785200
Alignment:
Q  165 aagcaagcatatttacttatcttgttcattaggtaaag 202  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21785163 aagcaagcatatttacttatcttgttcattaggtaaag 21785200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 399
Target Start/End: Original strand, 15713595 - 15713638
Alignment:
Q  356 caaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  15713595 caaagcaaacaccccaaagttcacgaccaaagatacaaagggtg 15713638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 21622693 - 21622744
Alignment:
Q  14 aaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaa 65  Q
    ||||||| ||| || ||||||||||||||||||||||||||||| |||||||    
T  21622693 aaagcaaagatactatttccatgaattttacttttcttgtccatcgagtaaa 21622744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 399
Target Start/End: Original strand, 21681622 - 21681665
Alignment:
Q  356 caaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    |||| |||||||||||||||||||||||||||||||| ||||||    
T  21681622 caaatcaaacaccccaaaattcacgaccaaagatacaaagggtg 21681665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 21808394 - 21808273
Alignment:
Q  306 aatgatggcatcccaaacta---ttaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtgaca 402  Q
    |||||||| |||||||||||   || || ||||  ||||| ||||| || | ||||| |||| ||||||||||||||||||||||||||| |||||| |     
T  21808394 aatgatggaatcccaaactacccttgaaaaaaagattgtggagctaaaaaattcaaatcaaataccccaaaattcacgaccaaagatacaaagggtggct 21808295  T
Q  403 gatcatctcaaaaatcgaacaa 424  Q
    ||  |||||| |||| ||||||    
T  21808294 gagtatctcagaaatagaacaa 21808273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 21787911 - 21787949
Alignment:
Q  38 attttacttttcttgtccattgagtaaagttatggacat 76  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  21787911 attttacttttcttgtccattgagtaaagtgatggacat 21787949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 21725694 - 21725731
Alignment:
Q  165 aagcaagcatatttacttatcttgttcattaggtaaag 202  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  21725694 aagcacgcatatttacttatcttgttcattaggtaaag 21725731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 21639321 - 21639404
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaa 99  Q
    |||||||| |||||||||| ||| |||||||||| | |||| |||||||||||||  |||||   |||||||||| | |||||||||    
T  21639321 aaaagcaaagatccttttttcattaattttacttattttgtacattgagtaaagtggtggac---atatagtttgttatgaggacaa 21639404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 21791419 - 21791453
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttt 47  Q
    |||||||| ||||||||||||||||||||||||||    
T  21791419 aaaagcaaagatcctttttccatgaattttacttt 21791453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 21740895 - 21740931
Alignment:
Q  166 agcaagcatatttacttatcttgttcattaggtaaag 202  Q
    |||||||||||||||||||||| |||| |||||||||    
T  21740895 agcaagcatatttacttatcttcttcaataggtaaag 21740931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 25232 - 25325
Alignment:
Q  306 aatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtg 399  Q
    |||||||||| |||||||| ||||||||||| ||| | |||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||    
T  25232 aatgatggcagcccaaactcttaaagaaaaaattgaggagctacaaaaatcaaagcaaacaccccaaaattcaccacccaagatacaaagggtg 25325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 34209 - 34277
Alignment:
Q  13 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatat 81  Q
    ||||||||  ||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||    
T  34209 aaaagcaaatatcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 34277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 34456 - 34514
Alignment:
Q  306 aatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaa 364  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||| ||||||||||||    
T  34456 aatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaa 34514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 34332 - 34369
Alignment:
Q  165 aagcaagcatatttacttatcttgttcattaggtaaag 202  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  34332 aagcacgcatatttacttatcttgttcattaggtaaag 34369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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