View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3849_low_9 (Length: 440)

Name: NF3849_low_9
Description: NF3849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3849_low_9
NF3849_low_9
[»] chr1 (5 HSPs)
chr1 (85-261)||(9260960-9261126)
chr1 (309-430)||(9261174-9261297)
chr1 (18-90)||(9260835-9260907)
chr1 (85-205)||(9883719-9883836)
chr1 (18-90)||(9883594-9883666)
[»] chr8 (3 HSPs)
chr8 (396-430)||(6480947-6480981)
chr8 (395-430)||(38959190-38959225)
chr8 (396-430)||(3308602-3308636)
[»] chr7 (1 HSPs)
chr7 (396-430)||(42684783-42684817)
[»] chr5 (3 HSPs)
chr5 (396-430)||(3154376-3154410)
chr5 (397-430)||(27060124-27060157)
chr5 (396-428)||(20998777-20998809)
[»] chr4 (5 HSPs)
chr4 (397-430)||(17696582-17696615)
chr4 (86-215)||(19319928-19320054)
chr4 (397-430)||(7647966-7647999)
chr4 (397-430)||(53338820-53338853)
chr4 (52-80)||(17219330-17219358)
[»] chr6 (2 HSPs)
chr6 (395-430)||(10269374-10269409)
chr6 (397-426)||(4422290-4422319)
[»] chr3 (2 HSPs)
chr3 (396-430)||(49109592-49109626)
chr3 (402-430)||(54508759-54508787)
[»] scaffold0121 (1 HSPs)
scaffold0121 (397-430)||(18333-18366)
[»] chr2 (1 HSPs)
chr2 (395-428)||(26818077-26818110)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 85 - 261
Target Start/End: Original strand, 9260960 - 9261126
Alignment:
Q  85 aaatagtttttagcacttatgcgttgcaagaaaccatttataaaatgaaaactaataattttaaaggtctctatttaatatgttgtgtgtatccctttag 184  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  9260960 aaatagtttttagcacttatgtgttgcaagaagccatttataaaatggaaaccaataattttaaacgtctctatttaatatgttgtgtgtatccctttag 9261059  T
Q  185 ctcactcaggtgatcatttatccttaataaacattaataaacatctcacataaaaatgttgatgatctttaaagttc 261  Q
    |||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||    
T  9261060 ctcactcaggtgatcatttatcc----------ttaataaacatctcacataaaaatgttgatgatctttaaagttc 9261126  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 309 - 430
Target Start/End: Original strand, 9261174 - 9261297
Alignment:
Q  309 gcctttcatagtagacaacggataaatcccaaatgaga--agtagaagaaaggaatgatgnnnnnnnttaaatgaataaatctatagtaatctacttact 406  Q
    ||||||| |||||||||| |||||||||||||||||||  |||||||| |||||||||||       |||||||||| ||||||||||||||||||||||    
T  9261174 gcctttcgtagtagacaatggataaatcccaaatgagaggagtagaagcaaggaatgatgaaaaaaattaaatgaatcaatctatagtaatctacttact 9261273  T
Q  407 atattataaagataaatccctatg 430  Q
    ||||| ||||||||||||||||||    
T  9261274 atattttaaagataaatccctatg 9261297  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 9260835 - 9260907
Alignment:
Q  18 agaaagatggttaaagcataaaataatacaagattttgagccatatttttcctcctttgcatgtaacaaatag 90  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9260835 agaaagatggttaaagcataaaaaaatacaagattttgagccatattttacctcctttgcatgtaacaaatag 9260907  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 9883719 - 9883836
Alignment:
Q  85 aaatagtttttagcacttatgcgttgcaagaaaccatttataaaatgaaaactaataattttaaaggtctctatttaatatgttgtgtgtatccctttag 184  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||||| ||| ||||    ||||| ||||||| | |||||||||| ||| |||||||||    
T  9883719 aaatagtttttagcatttatgagttgcaagaagccatttataaaatggaaattaatg---ttaaacgtctctactcaatatgttgtatgtgtccctttag 9883815  T
Q  185 ctcactcaggtgatcatttat 205  Q
    ||||||||| |||||||||||    
T  9883816 ctcactcagttgatcatttat 9883836  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 9883594 - 9883666
Alignment:
Q  18 agaaagatggttaaagcataaaataatacaagattttgagccatatttttcctcctttgcatgtaacaaatag 90  Q
    ||||||||| ||||||||||||  || ||| || |||||| ||||||||||||||||||| ||||||||||||    
T  9883594 agaaagatgattaaagcataaacaaacacacgaatttgagacatatttttcctcctttgcttgtaacaaatag 9883666  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 430
Target Start/End: Complemental strand, 6480981 - 6480947
Alignment:
Q  396 atctacttactatattataaagataaatccctatg 430  Q
    |||||||||||||||||||||||||||||||||||    
T  6480981 atctacttactatattataaagataaatccctatg 6480947  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 430
Target Start/End: Original strand, 38959190 - 38959225
Alignment:
Q  395 aatctacttactatattataaagataaatccctatg 430  Q
    |||||||||||||||||||| |||||||||||||||    
T  38959190 aatctacttactatattatatagataaatccctatg 38959225  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 430
Target Start/End: Complemental strand, 3308636 - 3308602
Alignment:
Q  396 atctacttactatattataaagataaatccctatg 430  Q
    ||||||||||||||||||||||| |||||||||||    
T  3308636 atctacttactatattataaagacaaatccctatg 3308602  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 430
Target Start/End: Original strand, 42684783 - 42684817
Alignment:
Q  396 atctacttactatattataaagataaatccctatg 430  Q
    |||||||||||||||||||||||||||||||||||    
T  42684783 atctacttactatattataaagataaatccctatg 42684817  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 430
Target Start/End: Complemental strand, 3154410 - 3154376
Alignment:
Q  396 atctacttactatattataaagataaatccctatg 430  Q
    |||||||||||||||||||||||||||||||||||    
T  3154410 atctacttactatattataaagataaatccctatg 3154376  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 397 - 430
Target Start/End: Original strand, 27060124 - 27060157
Alignment:
Q  397 tctacttactatattataaagataaatccctatg 430  Q
    ||||||||||||||||||||||||||||||||||    
T  27060124 tctacttactatattataaagataaatccctatg 27060157  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 20998809 - 20998777
Alignment:
Q  396 atctacttactatattataaagataaatcccta 428  Q
    |||||||||||||||||||||||||| ||||||    
T  20998809 atctacttactatattataaagataagtcccta 20998777  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 397 - 430
Target Start/End: Original strand, 17696582 - 17696615
Alignment:
Q  397 tctacttactatattataaagataaatccctatg 430  Q
    ||||||||||||||||||||||||||||||||||    
T  17696582 tctacttactatattataaagataaatccctatg 17696615  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 19320054 - 19319928
Alignment:
Q  86 aatagtttttagcacttatgcgttgcaagaaaccatttataaaatgaaaactaataattttaaaggtctctatttaatatgttgtgtgtatccctttagc 185  Q
    ||||| || ||||||||| | |||| ||| | |||||||||||||  ||| | |||   ||||| ||||||| ||||||| | | |||||||| ||||||    
T  19320054 aatagcttgtagcacttacgagttgtaaggagccatttataaaattgaaatttata---ttaaatgtctctaattaatatatcgcgtgtatccatttagc 19319958  T
Q  186 tcactcaggtgatcatttatccttaataaa 215  Q
     ||| || ||||||||||| ||||||||||    
T  19319957 ccacacaagtgatcatttaaccttaataaa 19319928  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Complemental strand, 7647999 - 7647966
Alignment:
Q  397 tctacttactatattataaagataaatccctatg 430  Q
    |||||||||||||||||||||||| |||||||||    
T  7647999 tctacttactatattataaagatatatccctatg 7647966  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Original strand, 53338820 - 53338853
Alignment:
Q  397 tctacttactatattataaagataaatccctatg 430  Q
    ||||||||||||||||||||||||||| ||||||    
T  53338820 tctacttactatattataaagataaattcctatg 53338853  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 17219358 - 17219330
Alignment:
Q  52 tttgagccatatttttcctcctttgcatg 80  Q
    |||||||||||||||||||||||||||||    
T  17219358 tttgagccatatttttcctcctttgcatg 17219330  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 430
Target Start/End: Original strand, 10269374 - 10269409
Alignment:
Q  395 aatctacttactatattataaagataaatccctatg 430  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10269374 aatctacttactatattataaagattaatccctatg 10269409  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 426
Target Start/End: Original strand, 4422290 - 4422319
Alignment:
Q  397 tctacttactatattataaagataaatccc 426  Q
    ||||||||||||||||||||||||||||||    
T  4422290 tctacttactatattataaagataaatccc 4422319  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 430
Target Start/End: Original strand, 49109592 - 49109626
Alignment:
Q  396 atctacttactatattataaagataaatccctatg 430  Q
    |||| ||||||||||||||||||||||||||||||    
T  49109592 atcttcttactatattataaagataaatccctatg 49109626  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Original strand, 54508759 - 54508787
Alignment:
Q  402 ttactatattataaagataaatccctatg 430  Q
    |||||||||||||||||||||||||||||    
T  54508759 ttactatattataaagataaatccctatg 54508787  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Complemental strand, 18366 - 18333
Alignment:
Q  397 tctacttactatattataaagataaatccctatg 430  Q
    ||||||||||||||||||||||||||| ||||||    
T  18366 tctacttactatattataaagataaatgcctatg 18333  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 428
Target Start/End: Original strand, 26818077 - 26818110
Alignment:
Q  395 aatctacttactatattataaagataaatcccta 428  Q
    ||||||||||||||||||||||||||| ||||||    
T  26818077 aatctacttactatattataaagataagtcccta 26818110  T

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