View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3850_high_1 (Length: 427)
Name: NF3850_high_1
Description: NF3850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3850_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 25225953 - 25226342
Alignment:
| Q |
16 |
attattcattcaattcattgtttctttctttcttatatcaatcaaattccacccttgtttttgttaccaaaacgtataaagattgattgattcatataaa |
115 |
Q |
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| T |
25225953 |
attattcattcaattcattgtttctttctttcttatatcaatcaaattccacccttgtttttgttaccaaaacgtataaagattgattgattcatataaa |
25226052 |
T |
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| Q |
116 |
caaacagagtgaatcacattaacagaaacaaattcattaagcattcatcaaaaaataagctttatttgatttctatttgtccaaaagaaacttgaatgtt |
215 |
Q |
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| T |
25226053 |
caaacagagtgaatcacattaacagaaacaaattcattaagcattcatcaaaaaataagctttatttgatttctatttgtccaaaagaaacttgaatgtt |
25226152 |
T |
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| Q |
216 |
gtaagcttattggatcattctaatctctttactagttagtaaacctgatcccagtgatgataaatgaaactaacaatactatatgaagttgattttatgc |
315 |
Q |
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| T |
25226153 |
gtaagcttattggatcattctaatctctttactagttagtaaacctgatccaagtgatgataaatgaaactagcaatacaatatgaagttgattttatgc |
25226252 |
T |
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| Q |
316 |
ccccatagtaaccctacccatttaaatcagaaacaggagcataacatcatcaaggaaacattttccatgcaatacaactaactactggta |
405 |
Q |
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| T |
25226253 |
ccccatagtaaccctacccatttaaatcagaaacaggagcataacatcatcaaggaaacattatccaagcaatacaactaactactggta |
25226342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 251 - 392
Target Start/End: Original strand, 25254947 - 25255084
Alignment:
| Q |
251 |
ttagtaaacctgatcccagtgatgataaatgaaactaacaatactatatgaagttgattttatgcccccatagtaaccctacccatttaaatcagaaaca |
350 |
Q |
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| T |
25254947 |
ttagtaaacctgatcccagtgatgataaatgaaactagcaatacaatctgaagttgatttgatg-ccccatagtaaccctacccatttaaatcagaaaca |
25255045 |
T |
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| Q |
351 |
ggagcataacatcatcaaggaaacattttccatgcaatacaa |
392 |
Q |
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| T |
25255046 |
ggggcataa---cattaaggaaacattttccatgcaatacaa |
25255084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 25167086 - 25167006
Alignment:
| Q |
169 |
aataagctttatttgatttctatttgtccaaaagaaacttgaa---tgttgtaagcttattggatcattctaatctcttta |
246 |
Q |
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| T |
25167086 |
aataagctttgattgatctctatttgtctaaaagaaacttgaatagtgttggaagcttcttggatgattctaatttcttta |
25167006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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