View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3850_high_3 (Length: 358)
Name: NF3850_high_3
Description: NF3850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3850_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 27447955 - 27448283
Alignment:
| Q |
20 |
cgggtgtcctgacattcagaaatatatcatcgataggtgtatgtttattgatcgtcttcatgtgtgatgcccacaagaagttgcgcatcacccaacttgg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27447955 |
cgggtgtcctgacattcagaaatatatcatcgataggtgtatgtttattgatcgtcttcatgtgtgatgcccacaagaagttgcgcatcacccaacttgg |
27448054 |
T |
|
| Q |
120 |
gagaaaatcatatttccacttagatcttcatatgcgatgggagcaaggtcctgcatgacgcgcatgactgttttctgaaatttagggagtgtggatctag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27448055 |
gagaaaatcatatttccacttagatcttcatatgcgatgggagcaaggtcctgcatgacgcgcatgactgttttctaaaatttagggagtgtggatctag |
27448154 |
T |
|
| Q |
220 |
aaatatttgcgaccttttcttctcaaatacttacttctggcgatctaaagttgataaaatcgactctagatggctaggagcggccggaaacatcctggag |
319 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27448155 |
aaatatttgcgaccttttcttctaaaatacttacttctggcgatctaaagttgataaaatcgactctagatggctaggagcggccggaaacatcctggag |
27448254 |
T |
|
| Q |
320 |
gcaaggattcatcatccaataatcctatg |
348 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27448255 |
gcaaggattcatcatccaataatcctatg |
27448283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 337
Target Start/End: Original strand, 18091722 - 18091897
Alignment:
| Q |
163 |
caaggtcctgcatgacgcgcatgactgttttctgaaatttagggagtgtggatctagaaatatttgcgaccttttcttctcaaatactta-cttctggcg |
261 |
Q |
| |
|
||||||| ||| ||||| ||| || ||||||||| ||| ||||||| |||||||| |||||| | ||||||||||||| ||||||| || || | | |
|
|
| T |
18091722 |
caaggtcatgcgcgacgcacataaccgttttctgatattgagggagtttggatctataaatatatacgaccttttcttcacaaatacatatttttttatg |
18091821 |
T |
|
| Q |
262 |
atctaaagttgataaaatcgactctagatggctaggagcggccggaaacatcctggaggcaaggattcatcatcca |
337 |
Q |
| |
|
|||||||| ||||||||| | |||||| |||||||||| |||| ||||||| |||||||| |||||||| |||| |
|
|
| T |
18091822 |
atctaaagctgataaaatatattctagagggctaggagctgccgtaaacatcaaggaggcaaagattcatcgtcca |
18091897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 18091469 - 18091545
Alignment:
| Q |
74 |
tcttcatgtgtgatgcccacaagaagttgcgcatcacccaacttgggagaaaatcatatttccacttagatcttcat |
150 |
Q |
| |
|
||||||||||||| |||||| | ||| ||| |||||| ||||||||||| |||||| ||| ||| ||| ||||||| |
|
|
| T |
18091469 |
tcttcatgtgtgacgcccactaaaagctgcacatcacgcaacttgggagcaaatcagattaccatttacgtcttcat |
18091545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University