View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3850_high_9 (Length: 237)
Name: NF3850_high_9
Description: NF3850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3850_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35980715 - 35980495
Alignment:
| Q |
1 |
taaataagtcatttgaagttttacttgaaatgaaatagcagcaacatatattaacatatgttttctaatactaagaagcaaagtgatatatgaggattct |
100 |
Q |
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| T |
35980715 |
taaataagtcatttgaagttttacttgaaatgaaatagcagcaacatatattaacatatgttttctaatactaagaagcaaagtgatatatgaggattct |
35980616 |
T |
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| Q |
101 |
taattacatagcaaagtcaatcattgtcaagtgtacaatgatcccacatatcaggaaactactatcaaattaaactcctattctagaaaggatgtaaaat |
200 |
Q |
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| T |
35980615 |
taattacatagcaaagtcaatcattgtcaagtgtacaatgatcccacatatcaggaaactactatcaaattaaactcctattctagaaaggatgtaaaat |
35980516 |
T |
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| Q |
201 |
ggacagatagctagcataatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
35980515 |
ggacagatagctagcataatt |
35980495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 35970274 - 35970162
Alignment:
| Q |
99 |
cttaattacatagcaaagtcaa-tcattgtcaagtgtacaatgatcccacatatcaggaaactactatcaaattaaactcctattctagaaaggatgtaa |
197 |
Q |
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| T |
35970274 |
cttaattacacatcaaagtcacgtcattgtcaagtgtacaatgatcccac---------aactactaacaaattagactcctattctaagaatgatataa |
35970184 |
T |
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| Q |
198 |
aatggacagatagctagcataa |
219 |
Q |
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|| || ||||||||| |||||| |
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| T |
35970183 |
aacggccagatagctggcataa |
35970162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 35970354 - 35970293
Alignment:
| Q |
33 |
aaatagcagcaacatatattaa-catatgttttctaatactaagaagcaaagtgatatatga |
93 |
Q |
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|||||||||||||||| ||| | |||||||||||||||| | | ||||||||||||| |||| |
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| T |
35970354 |
aaatagcagcaacatagatttagcatatgttttctaatatttaaaagcaaagtgatacatga |
35970293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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