View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3850_low_10 (Length: 250)
Name: NF3850_low_10
Description: NF3850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3850_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 20365052 - 20365272
Alignment:
| Q |
17 |
actttcgagttattttctttcaccgaatcttgattagtcagcatatttgcagcagttgaaggtagtgatgagtgctttctcttgatttgattgcttatgg |
116 |
Q |
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| T |
20365052 |
actttcgagttattttctttcgctgaatcttgattagtcagcatatttgcagcagttgaaggtagtgatgagtgctttctctttatttgattgcttatgg |
20365151 |
T |
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| Q |
117 |
tttgcttgaaagttgccaaaataagctggtggacaatgcaacacaaagataattcaaaacaaggatttgaaaacaattaatcatcaatannnnnnnataa |
216 |
Q |
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| T |
20365152 |
tttgcttgaaagttgccaaaataagctggtggacaatgcaacac--agataattcaaaacaaggatttgaaaacaattaatcatcaatatttttttataa |
20365249 |
T |
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| Q |
217 |
ccatgttataagaacaaagtatt |
239 |
Q |
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|||||||||| | |||||||||| |
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| T |
20365250 |
ccatgttataggtacaaagtatt |
20365272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 20372830 - 20373052
Alignment:
| Q |
17 |
actttcgagttattttctttcaccgaatcttgattagtcagcatatttgcagcagttgaaggtagtgatgagtgctttctcttgatttgattgcttatgg |
116 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
20372830 |
actttcgagttattttctttcgctgaatcttgattagtcagcatattagcagcagttgaaggtagtgatgagtcctttctctttatttgattgcttatgg |
20372929 |
T |
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| Q |
117 |
tttgcttgaaagttgccaaaataagctggtggacaatgcaacacaaagataattcaaaacaaggatttgaaaacaattaatcatcaatannnnnnnataa |
216 |
Q |
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| T |
20372930 |
tttgcttgaaagttgccaaaataagctggtggacaatgcaacacaaagataattcaaaacaaggatttgaaaacaattaatcatcaatatttttttataa |
20373029 |
T |
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| Q |
217 |
ccatgttataagaacaaagtatt |
239 |
Q |
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||| |||||| | |||||||||| |
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| T |
20373030 |
ccacgttataggcacaaagtatt |
20373052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 20385464 - 20385596
Alignment:
| Q |
17 |
actttcgagttattttctttcaccgaatcttgattagtcagcatatttgcagcagttgaaggtagtgatgagtgctttctcttgatttgattgcttatgg |
116 |
Q |
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||||||||| | ||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20385464 |
actttcgaggtgttttctttcgctgaatcttgattagtcaacatatttggagcagttgaaggtagtgatgagtgctttctcttgatttgattgcttatgg |
20385563 |
T |
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| Q |
117 |
tttgcttgaaagttgccaaaataagctggtgga |
149 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
20385564 |
tttgcttgaaagttaccaaaataagctggtgga |
20385596 |
T |
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