View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3850_low_11 (Length: 241)
Name: NF3850_low_11
Description: NF3850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3850_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 52624249 - 52624067
Alignment:
| Q |
40 |
caaccaactaactattgtagccatggaaagtgatgaagaatgcaatacaggtctatgtctcggtcttggaatgggtgcaacaaaggtgaagaagcagaaa |
139 |
Q |
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| T |
52624249 |
caaccaactaactattgtagccatggaaagtgatgacgaatgcaatacaggtctatgtctcggtcttggaatgggtgcaacgaaggtgaagaagcagaaa |
52624150 |
T |
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| Q |
140 |
ttggtgagtaaacctatgattgcaccttgttttgacctagcttttgagctttgtccaaaaggagaacctatgaacgtacacaa |
222 |
Q |
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| T |
52624149 |
ttggtgaataaacctgtgattgcaccttgttttgacctagcttttgagctttgttcaaaaggagaacctatgaacgtacacaa |
52624067 |
T |
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Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 40039309 - 40039487
Alignment:
| Q |
44 |
caactaactattgtagccatggaaagtgatgaagaatgcaatacaggtctatgtctcggtcttggaatgggtgcaacaaaggtgaagaagcagaaattgg |
143 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
40039309 |
caaccaactattgtagccatggaaagtgatgaagaatgcaatacaggtctatgtctcggtcttggaatgggtgcaacaaaggagaagaagcagaaattag |
40039408 |
T |
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| Q |
144 |
tgagtaaacctatgattgcaccttgttttgacctagcttttgagctttgtccaaaaggagaacctatgaacgtacacaa |
222 |
Q |
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||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
40039409 |
tgaataaacctgtgattgcaccttgtttagacctagcttttgagctttgtccaaaagaagaagctatgaacgtacacaa |
40039487 |
T |
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