View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3850_low_14 (Length: 202)

Name: NF3850_low_14
Description: NF3850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3850_low_14
NF3850_low_14
[»] chr2 (10 HSPs)
chr2 (1-202)||(1533041-1533242)
chr2 (1-202)||(27888515-27888716)
chr2 (1-202)||(40899967-40900168)
chr2 (1-130)||(14951132-14951261)
chr2 (1-130)||(6186566-6186695)
chr2 (1-133)||(38531651-38531782)
chr2 (1-103)||(9910316-9910418)
chr2 (130-202)||(6705381-6705453)
chr2 (161-201)||(9910512-9910552)
chr2 (1-40)||(6705344-6705383)
[»] chr1 (16 HSPs)
chr1 (1-202)||(27786943-27787144)
chr1 (2-202)||(29099279-29099480)
chr1 (1-202)||(25537452-25537649)
chr1 (4-130)||(14351486-14351612)
chr1 (67-173)||(47896527-47896632)
chr1 (33-201)||(26842181-26842341)
chr1 (8-130)||(10494544-10494666)
chr1 (130-202)||(15495749-15495821)
chr1 (1-105)||(2077727-2077831)
chr1 (8-105)||(11814354-11814451)
chr1 (161-202)||(2077604-2077645)
chr1 (160-202)||(32058528-32058570)
chr1 (161-202)||(11814606-11814647)
chr1 (78-172)||(8039051-8039148)
chr1 (1-40)||(15495712-15495751)
chr1 (70-139)||(4654041-4654109)
[»] chr3 (6 HSPs)
chr3 (1-202)||(46743089-46743290)
chr3 (67-173)||(11387284-11387389)
chr3 (1-72)||(52984642-52984713)
chr3 (1-56)||(52991648-52991703)
chr3 (161-202)||(31699132-31699173)
chr3 (1-130)||(31698936-31699065)
[»] chr7 (10 HSPs)
chr7 (1-202)||(32978959-32979160)
chr7 (4-202)||(21590739-21590937)
chr7 (67-202)||(34293714-34293850)
chr7 (67-202)||(36582648-36582784)
chr7 (67-173)||(10365595-10365700)
chr7 (1-103)||(24717746-24717848)
chr7 (132-202)||(26712100-26712170)
chr7 (21-133)||(26711885-26711998)
chr7 (161-202)||(43047875-43047916)
chr7 (8-105)||(43047997-43048094)
[»] chr8 (8 HSPs)
chr8 (1-201)||(10181803-10182003)
chr8 (1-202)||(15050243-15050441)
chr8 (1-102)||(39580354-39580455)
chr8 (1-103)||(3763298-3763400)
chr8 (75-173)||(38499049-38499146)
chr8 (1-103)||(5515020-5515122)
chr8 (161-202)||(5515205-5515246)
chr8 (161-202)||(3763163-3763204)
[»] chr4 (5 HSPs)
chr4 (8-202)||(45872871-45873064)
chr4 (1-202)||(42677804-42678004)
chr4 (128-202)||(12130392-12130466)
chr4 (1-58)||(55728389-55728446)
chr4 (5-126)||(52635388-52635508)
[»] chr5 (11 HSPs)
chr5 (5-156)||(24867336-24867487)
chr5 (4-133)||(12155982-12156111)
chr5 (8-145)||(26331678-26331815)
chr5 (1-145)||(26331337-26331481)
chr5 (1-103)||(42269112-42269214)
chr5 (131-202)||(40680747-40680818)
chr5 (1-105)||(40600189-40600293)
chr5 (161-202)||(40600067-40600108)
chr5 (149-202)||(34574336-34574390)
chr5 (162-202)||(42268988-42269028)
chr5 (134-199)||(11470806-11470870)
[»] chr6 (6 HSPs)
chr6 (5-201)||(10670231-10670418)
chr6 (67-202)||(9566640-9566776)
chr6 (1-126)||(24350486-24350611)
chr6 (1-133)||(30845122-30845254)
chr6 (1-124)||(10772594-10772717)
chr6 (67-173)||(11366563-11366667)
[»] scaffold0005 (1 HSPs)
scaffold0005 (67-173)||(269760-269865)
[»] scaffold0974 (1 HSPs)
scaffold0974 (1-130)||(2687-2816)
[»] scaffold0725 (1 HSPs)
scaffold0725 (150-202)||(953-1006)
[»] scaffold0083 (1 HSPs)
scaffold0083 (2-72)||(2886-2958)
[»] scaffold0088 (1 HSPs)
scaffold0088 (155-187)||(26872-26904)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1533041 - 1533242
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  1533041 aaccaagaagtcatctccaaaaaccaaagtccaaacgtttgcgcaatagcagaaacaaatcttgtgccaaaccattaaaaaacctctccaaaataaccat 1533140  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1533141 caaacttaccataaacccatgtaatcgcaccttaaacaagtcataccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 1533240  T
Q  201 ac 202  Q
    ||    
T  1533241 ac 1533242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27888515 - 27888716
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||  || |||||| ||||||||||||||||||||||||||    
T  27888515 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagtagaaacaaatcttgtgtcaaacctttaaaaaacctctccaaaataaccat 27888614  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 200  Q
    | ||| ||| | |||| ||||||| ||||  ||||||||| ||| ||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  27888615 cgaacctaccaaaaactcatgtaaccgcagtttaaacaagccacgccagctaacatccgtgtgtttgaaaaccccatcaacaacaaactcatagaggaaa 27888714  T
Q  201 ac 202  Q
    ||    
T  27888715 ac 27888716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 40899967 - 40900168
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||||||| ||||||||||||||||| || ||||| ||  ||| ||| ||||||||||||  ||||||||| | ||||||||||||||||||| ||||    
T  40899967 aaccaagaagccatctccaaaaaccaaattctaaacgtctatgcattagtagaaacaaatcttgtgccaaaccgtaaaaaaacctctccaaaatatccat 40900066  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 200  Q
     |||| ||| | ||| |||||||| || |||||||||||| ||   | ||||| |||| |||||||||||||| ||||| |||||||||||| |||||||    
T  40900067 gaaacctaccaaaaatccatgtaaccgaaccttaaacaagccatgacgtctaacatccatgtatttgaaaacctcatcatcaacaaactcatggaagaaa 40900166  T
Q  201 ac 202  Q
    ||    
T  40900167 ac 40900168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 14951261 - 14951132
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    ||||||||| ||||||||||| || |||||| |||| || ||||||||||||||||||||||  ||||||||| ||  |||||| |||||||||||||||    
T  14951261 aaccaagaaatcatctccaaacactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaaaccgttgcaaaacccctccaaaataaccat 14951162  T
Q  101 caaacttactataaacccatgtaatcgcac 130  Q
    ||||| ||| | |||| | |||||||||||    
T  14951161 caaacctaccaaaaactcgtgtaatcgcac 14951132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 6186695 - 6186566
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||||||||||||||||||||| |||||| |||| || ||||||||||| ||||||||||  || |||||| ||  |||||| || ||||||||  ||    
T  6186695 aaccaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcaaaaacaaatcttgtgtcaaaccgttgcaaaaccccttcaaaataattat 6186596  T
Q  101 caaacttactataaacccatgtaatcgcac 130  Q
    ||||||||| | |||| | |||||||||||    
T  6186595 caaacttaccaaaaactcgtgtaatcgcac 6186566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 38531782 - 38531651
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| |||||||||||||||||||| ||| |||| |||||| | ||||||||||||||||  ||| ||||  ||  |||||| |||||||| ||||||    
T  38531782 aaccaaaaagtcatctccaaaaaccaacgtctaaacacctgcgtagtagcagaaacaaatcttgtgctaaactgttgcaaaacc-ctccaaaagaaccat 38531684  T
Q  101 caaacttactataaacccatgtaatcgcacctt 133  Q
    ||||| ||| | |||||| ||||| ||||||||    
T  38531683 caaacctaccaaaaacccgtgtaaccgcacctt 38531651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9910316 - 9910418
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||  || |||||| ||  ||||||  || |||||||| ||    
T  9910316 aaccaaaaagtcatctccaaaaaccaaagtctaaacgcctgagcaatagcagaaacaagtcttgtgacaaaccgttgcaaaacccatcaaaaataactat 9910415  T
Q  101 caa 103  Q
    |||    
T  9910416 caa 9910418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 6705381 - 6705453
Alignment:
Q  130 ccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    ||||||||||| |||||| ||||| |||| |||||||||||||   |||||||||||||||||| ||||||||    
T  6705381 ccttaaacaagccacaccgtctaacatccatgtatttgaaaacattatcaacaacaaactcatataagaaaac 6705453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 9910512 - 9910552
Alignment:
Q  161 gtatttgaaaaccccatcaacaacaaactcatagaagaaaa 201  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  9910512 gtatttgaaaaccccattaacaacaaactcatagaagaaaa 9910552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6705344 - 6705383
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcct 40  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  6705344 aaccaagaagtcatcaccaaaaaccaaagtctaaacgcct 6705383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27787144 - 27786943
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  27787144 aaccaagaagtcatctccaaaaaccaaagtccaaacgtctgcgcaatagcagaaacaaatcttaagccaaaccattaaaaaacctctccaaaataaccat 27787045  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 200  Q
    ||||| ||| | ||||||||||||  |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  27787044 caaacctaccaaaaacccatgtaactgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaaccccatcaacaacaaactcataaaagaaa 27786945  T
Q  201 ac 202  Q
    ||    
T  27786944 ac 27786943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 29099279 - 29099480
Alignment:
Q  2 accaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatc 101  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||| |  ||||| | | || ||||||||||||||||||||||||    
T  29099279 accaagaagtcatctccaaaaaccaaagtctaaacgtttgcgcaatagcataaacaaattttgtgccatatcgttgaaaaacctctccaaaataaccatc 29099378  T
Q  102 aaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaa-ccccatcaacaacaaactcatagaagaaa 200  Q
    |||||||| | ||  |||||||||| | ||||||||||| |||||||||||| |||| || ||||||||| |||| ||||||||||||||||||||||||    
T  29099379 aaacttaccaaaagtccatgtaatcacgccttaaacaagccacaccatctaacatccatgcatttgaaaacccccctcaacaacaaactcatagaagaaa 29099478  T
Q  201 ac 202  Q
    ||    
T  29099479 ac 29099480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 25537452 - 25537649
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    ||||||||| ||||||  ||||| ||||||| |||||||| || ||||||||||||||||||  || || ||| || ||||||||||||||  |||||||    
T  25537452 aaccaagaaatcatcta-aaaaatcaaagtctaaacgcctacgaaatagcagaaacaaatcttgtgtcataccgttgaaaaacctctccaa--taaccat 25537548  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 200  Q
    ||||| ||| | |||| ||||||| ||||||||||||||| |||||| ||||| |||  |||||||||||| ||| ||||||||||||||||||||||||    
T  25537549 caaacctaccaaaaactcatgtaaccgcaccttaaacaagccacaccgtctaacatca-tgtatttgaaaatcccctcaacaacaaactcatagaagaaa 25537647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 14351612 - 14351486
Alignment:
Q  4 caagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaa 103  Q
    ||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||  ||||||||||||  |||||| ||||||||||||||||||    
T  14351612 caagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctccaaaataaccatcaa 14351513  T
Q  104 acttactataaacccatgtaatcgcac 130  Q
    || ||| | |||| |  ||||||||||    
T  14351512 acctaccaaaaactcgcgtaatcgcac 14351486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 47896527 - 47896632
Alignment:
Q  67 ccaaaccattaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtattt 166  Q
    |||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||| ||||||||||||||  ||||||| |||| ||||||||||||    
T  47896527 ccaaaccattaaaaaacctctccaaa-taaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaaccacaccagctaacatccgtgtattt 47896625  T
Q  167 gaaaacc 173  Q
    |||||||    
T  47896626 gaaaacc 47896632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 26842341 - 26842181
Alignment:
Q  33 aaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcacct 132  Q
    |||| |||||||||||| ||||||||||||  || || ||| || ||||||||||||||| |||||||||||| ||| | |||||||||||  |||| ||    
T  26842341 aaacacctgcgcaataggagaaacaaatcttgtgtcataccgttgaaaaacctctccaaactaaccatcaaacctaccaaaaacccatgtacccgcatct 26842242  T
Q  133 taaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaaa 201  Q
    |||||||  |||||| |||||    | |||||||||||||||   ||||||||||||||||||||||||    
T  26842241 taaacaa-ccacaccgtctaa----catgtatttgaaaaccc---caacaacaaactcatagaagaaaa 26842181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 10494544 - 10494666
Alignment:
Q  8 aagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaaactt 107  Q
    |||||||||||||||| ||||||| ||||||||  ||||||||||||||||||||  ||||||||||||  |||||| ||  |||||||||||||||| |    
T  10494544 aagtcatctccaaaaatcaaagtctaaacgcctttgcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctataaaataaccatcaaacct 10494643  T
Q  108 actataaacccatgtaatcgcac 130  Q
    || | ||| || ||||| |||||    
T  10494644 accaaaaatccgtgtaaccgcac 10494666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 15495749 - 15495821
Alignment:
Q  130 ccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    ||||||||||| |||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||    
T  15495749 ccttaaacaagccacaccgtctaacatccatgtatttgaaaacctcatcaacaacaaactcatagaagaaaac 15495821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 2077831 - 2077727
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| |||||||||||||||||||||||| ||||| ||| ||||||||| |||||| |||  ||| ||||| ||  ||||||  |||||||||| |||    
T  2077831 aaccaaaaagtcatctccaaaaaccaaagtctaaacgtctgagcaatagcataaacaagtcttgtgcaaaaccgttgcaaaacccatccaaaataatcat 2077732  T
Q  101 caaac 105  Q
    |||||    
T  2077731 caaac 2077727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 11814354 - 11814451
Alignment:
Q  8 aagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaaac 105  Q
    |||| ||||||||||||| ||||| |||||| |||||||||||||||| ||||||  |||| |||  ||  |||||| ||||||| ||||||||||||    
T  11814354 aagtgatctccaaaaacctaagtctaaacgcttgcgcaatagcagaaataaatcttgtgcctaactgttgcaaaacccctccaaagtaaccatcaaac 11814451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 2077645 - 2077604
Alignment:
Q  161 gtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  2077645 gtatttgaaaaccccattaacaacaaactcatagaagaaaac 2077604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 32058528 - 32058570
Alignment:
Q  160 tgtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  32058528 tgtatttgaaaaccacatcaacaacgaactcatagaagaaaac 32058570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 11814606 - 11814647
Alignment:
Q  161 gtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  11814606 gtatttgaaaaccctattaacaacaaactcatagaagaaaac 11814647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 8039051 - 8039148
Alignment:
Q  78 aaaaacctctccaaa---ataaccatcaaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaac 172  Q
    |||||||||||||||   ||||||||||||| ||| | |||||||||||| | |||||||||||   ||||||| |||| || ||||| | |||||||    
T  8039051 aaaaacctctccaaataaataaccatcaaacctaccaaaaacccatgtaaccacaccttaaacagaccacaccagctaacatgcgtgtgtatgaaaac 8039148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15495712 - 15495751
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcct 40  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  15495712 aaccaagaagtcatcaccaaaaaccaaagtctaaacgcct 15495751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 4654109 - 4654041
Alignment:
Q  70 aaccattaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcaccttaaacaa 139  Q
    |||| |||||||||||||||||| ||| |||||||  ||| | |||||||||||| ||||| ||||||||    
T  4654109 aaccgttaaaaaacctctccaaa-taatcatcaaatctaccaaaaacccatgtaaccgcactttaaacaa 4654041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 46743290 - 46743089
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  46743290 aaccaagaagtcatctctaaaaaccaaagtccaaacgcccgcgcaatagcagaaacaaatcttgtgccaaaccattaaaaaacctatccaaaataaccat 46743191  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 200  Q
    ||||| ||| | |||| |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46743190 caaacctaccaaaaactcatgcaatcgcaccttaaacaagccacaccatctaacatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 46743091  T
Q  201 ac 202  Q
    ||    
T  46743090 ac 46743089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 11387284 - 11387389
Alignment:
Q  67 ccaaaccattaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtattt 166  Q
    |||||||||||||| ||||||||| | |||||||||||| ||| | ||||||| |||| ||||||||||||||  ||||||| |||| ||||||||||||    
T  11387284 ccaaaccattaaaacacctctccaga-taaccatcaaacctaccaaaaacccacgtaaccgcaccttaaacaaaccacaccagctaacatccgtgtattt 11387382  T
Q  167 gaaaacc 173  Q
    |||||||    
T  11387383 gaaaacc 11387389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 52984713 - 52984642
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaac 72  Q
    |||||||||||||||| ||||||| |||||| |||| || ||||||||||||||||||||||  ||||||||    
T  52984713 aaccaagaagtcatctgcaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaaac 52984642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 52991703 - 52991648
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaac 56  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  52991703 aaccaagaagtcatctccaaaaatcaaagtctaaacgcccgcgcaatagaagaaac 52991648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 31699132 - 31699173
Alignment:
Q  161 gtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  31699132 gtatttgaaaaccccattaacaacaaactcatagaagaaaac 31699173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 31698936 - 31699065
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| |||| ||||||||||||||||||| ||| ||||  |||||| || |||||| |||  || |||||  ||  ||||||  ||||||||||||||    
T  31698936 aaccaaaaagtaatctccaaaaaccaaagtctaaatgcctaagcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccat 31699035  T
Q  101 caaacttactataaacccatgtaatcgcac 130  Q
     || | ||| | |||||| ||||| |||||    
T  31699036 gaatcctaccaaaaacccgtgtaaccgcac 31699065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 2e-72; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 32978959 - 32979160
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||  ||||||||  ||||||||||||||||||||||||||    
T  32978959 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatgacataaacaaatcttgtgccaaactgttaaaaaacctctccaaaataaccat 32979058  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 200  Q
    |||||  || | |||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  32979059 caaacccaccaaaaacccatgtaaccgcaccttaaacaagccacaccatctaatatccgcctatttgaaaactccatcaacaacaaactcatagaagaaa 32979158  T
Q  201 ac 202  Q
    ||    
T  32979159 ac 32979160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 21590937 - 21590739
Alignment:
Q  4 caagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaa 103  Q
    |||||||||||||||||||| |||| || |||||  || ||||||||||||||||||||  ||||||||| |  ||||| |||||||||||||||| |||    
T  21590937 caagaagtcatctccaaaaaacaaattctaaacgtttgtgcaatagcagaaacaaatcttgtgccaaaccgtagaaaaatctctccaaaataaccaacaa 21590838  T
Q  104 acttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    || ||| | ||| |||| ||| ||||||||||||||||||| || | ||| |||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  21590837 acctaccaaaaatccatctaaccgcaccttaaacaagtcacgccgtttaacatccatgtatttgaaaactccatcatcaacaaactcatagaagaaaac 21590739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 34293850 - 34293714
Alignment:
Q  67 ccaaaccattaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtattt 166  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||| | ||| |||||||| ||||||||||||||  |||| || |||| |||| |||||||    
T  34293850 ccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaatccatgtaaccgcaccttaaacaaaccacatcagctaacatccatgtattt 34293751  T
Q  167 gaaaaccccatcaacaac-aaactcatagaagaaaac 202  Q
    ||||||| |||||||||| |||||| |||||||||||    
T  34293750 gaaaacctcatcaacaacaaaactcctagaagaaaac 34293714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 36582648 - 36582784
Alignment:
Q  67 ccaaaccattaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtattt 166  Q
    ||||||| ||||||||| | ||||||||||||||||||| ||| | |||||||||||| ||||| ||||||||  |||||||  ||| ||||||||||||    
T  36582648 ccaaaccgttaaaaaacatttccaaaataaccatcaaacctaccaaaaacccatgtaaccgcactttaaacaaaccacaccagttaagatccgtgtattt 36582747  T
Q  167 gaaaaccccatcaacaac-aaactcatagaagaaaac 202  Q
    ||||||| |||||||||| |||||| |||||||||||    
T  36582748 gaaaacctcatcaacaacaaaactcgtagaagaaaac 36582784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 10365595 - 10365700
Alignment:
Q  67 ccaaaccattaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtattt 166  Q
    ||||||| |||||||||||||||||| |||||||||||| ||| | |||||||||||| |||||||||||||   ||||||| |||| |||||||| |||    
T  10365595 ccaaaccgttaaaaaacctctccaaa-taaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacagaccacaccagctaacatccgtgtgttt 10365693  T
Q  167 gaaaacc 173  Q
    |||||||    
T  10365694 gaaaacc 10365700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24717746 - 24717848
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||  ||||||||  ||  ||||||  ||||||||||||||    
T  24717746 aaccaaaaagtcatctccaaaaaccaaagtctaaacgcctgagcaatagtagaaacaagtcttgtgccaaacagttgcaaaacccatccaaaataaccat 24717845  T
Q  101 caa 103  Q
    |||    
T  24717846 caa 24717848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 26712100 - 26712170
Alignment:
Q  132 ttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    |||||||||| ||||  ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  26712100 ttaaacaagttacacggtctaacatccgtgtatttgaaaaccccatcagcaacgaactcatagaagaaaac 26712170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 26711885 - 26711998
Alignment:
Q  21 aaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctca-tgccaaaccattaaaaaacctctccaaaataaccatcaaacttactataaaccca 119  Q
    |||||||| || ||||| | | |||||||| ||||||||||| | ||||||||| || ||||| | ||| |||||||||||||||| ||| | |||||||    
T  26711885 aaaccaaaatcgaaacggccgtgcaatagcggaaacaaatcttagtgccaaaccgttgaaaaatccctctaaaataaccatcaaacctaccaaaaaccca 26711984  T
Q  120 tgtaatcgcacctt 133  Q
    ||||| ||||||||    
T  26711985 tgtaaccgcacctt 26711998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 43047916 - 43047875
Alignment:
Q  161 gtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  43047916 gtattagaaaaccccattaacaacaaactcatagaagaaaac 43047875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 43048094 - 43047997
Alignment:
Q  8 aagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaaac 105  Q
    |||||||||||||||||||||||| ||| ||  | ||||||||| ||||||||||  ||  ||||| ||  |||| |  |||||||||||||||||||    
T  43048094 aagtcatctccaaaaaccaaagtctaaatgcacgagcaatagcataaacaaatcttgtgtaaaaccgttgcaaaatccatccaaaataaccatcaaac 43047997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 10181803 - 10182003
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||||||||||||||||||||  |||| ||||||| ||| | ||||||| |||||||||   ||||||||| ||||||||||||||||||||| ||||    
T  10181803 aaccaagaagtcatctccaaaaattaaagaccaaacgactgggaaatagcataaacaaatcatgtgccaaaccgttaaaaaacctctccaaaatagccat 10181902  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 200  Q
    ||||| ||| | ||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10181903 caaacctaccaaaaatccatgtaaccgcaccttaaacaagtcacaccatataacatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 10182002  T
Q  201 a 201  Q
    |    
T  10182003 a 10182003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15050441 - 15050243
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    ||||||||| ||||||  ||||| ||||||| |||||||| |||||||||||||||||||||  || || ||| || ||||||||||||  |||||||||    
T  15050441 aaccaagaaatcatctaaaaaaatcaaagtctaaacgcctacgcaatagcagaaacaaatcttgtgtcataccgttgaaaaacctctcc--aataaccat 15050344  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 200  Q
    ||||| ||| | |||| ||||||| |||||||||||||||  ||||| ||||| || | |||||||||||| ||| ||||||||||||||||||||||||    
T  15050343 caaacctaccaaaaactcatgtaaccgcaccttaaacaagcaacaccgtctaacat-catgtatttgaaaatcccctcaacaacaaactcatagaagaaa 15050245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 39580455 - 39580354
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||  || |||||| || ||||| || ||||||||||||||    
T  39580455 aaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcacaatagcataaacaaatcttgtgtcaaaccgttgaaaaatctatccaaaataaccat 39580356  T
Q  101 ca 102  Q
    ||    
T  39580355 ca 39580354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3763400 - 3763298
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| |||||||||||||||| ||||||  |||| |||| |||||||||||||||| |||  ||||||||||||  |||||   |||||||||| |||    
T  3763400 aaccaaaaagtcatctccaaaaatcaaagtttaaacacctgagcaatagcagaaacaagtcttgtgccaaaccattgcaaaactcatccaaaataatcat 3763301  T
Q  101 caa 103  Q
    |||    
T  3763300 caa 3763298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 38499049 - 38499146
Alignment:
Q  75 ttaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaacc 173  Q
    |||||||||||||| ||| ||||||| |||| ||| | ||||||||||||  |||||||||||||  |||||||  ||| |||||||||||||||||||    
T  38499049 ttaaaaaacctctctaaa-taaccattaaacataccaaaaacccatgtaactgcaccttaaacaaaccacaccagttaacatccgtgtatttgaaaacc 38499146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 5515020 - 5515122
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| ||||||||||||||||||||| || ||| ||||| ||||||| |||||||| |||  ||||||||  ||  |||| |  ||||||||||||||    
T  5515020 aaccaaaaagtcatctccaaaaaccaaattctaaatgcctgagcaatagtagaaacaagtcttgtgccaaactgttgcaaaatccatccaaaataaccat 5515119  T
Q  101 caa 103  Q
    |||    
T  5515120 caa 5515122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 5515205 - 5515246
Alignment:
Q  161 gtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  5515205 gtatttgaaaacccaattaacaacaaactcatagaagaaaac 5515246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 3763204 - 3763163
Alignment:
Q  161 gtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    ||||||||||||  ||| ||||||||||||||||||||||||    
T  3763204 gtatttgaaaacttcattaacaacaaactcatagaagaaaac 3763163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 45872871 - 45873064
Alignment:
Q  8 aagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaaactt 107  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||  | | ||||| ||  ||||| ||||||||||||||| ||||| |    
T  45872871 aagtcatctccaaaaaccaaagtctaaacgcatgcgcaatagcagaaacaaatcttgtacgaaaccgttgcaaaacgtctccaaaataaccaccaaacct 45872970  T
Q  108 actataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    || | ||||||| |||| |||||||||||||||||| ||| ||||| |||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  45872971 accaaaaacccacgtaaccgcaccttaaacaagtcataccgtctaacatccatgtatctgaaaacccc-tcaacaacaaactcatagaagaaaac 45873064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 42678004 - 42677804
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||||||||||||||  |||||||||||| |||||||||| ||||| || ||| ||||||  | ||||||  || |||||||||| ||||||||||||    
T  42678004 aaccaagaagtcatctctcaaaaccaaagtctaaacgcctgcacaataacataaaaaaatcttgtaccaaactgttgaaaaacctcttcaaaataaccat 42677905  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaa 200  Q
     |||| ||| | |||| ||||||| ||||||||||||||||||||   ||||| |||| |||| ||||||||| ||||||||||||||||||||||||||    
T  42677904 gaaacctaccacaaactcatgtaaccgcaccttaaacaagtcacagtgtctaacatccatgta-ttgaaaacctcatcaacaacaaactcatagaagaaa 42677806  T
Q  201 ac 202  Q
    ||    
T  42677805 ac 42677804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 12130392 - 12130466
Alignment:
Q  128 caccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    ||||||||||||| |||  | ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||    
T  12130392 caccttaaacaagccacgtcgtctaacatccatgtatttgaaaacctcatcaacaacaaactcatagaagaaaac 12130466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 55728389 - 55728446
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaa 58  Q
    |||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||    
T  55728389 aaccaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaa 55728446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 52635388 - 52635508
Alignment:
Q  5 aagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaaa 104  Q
    |||||||||| ||||||||| |||||| ||||  | || |||||||||||||||||||  ||||||| | ||  |||| | |||||||||||||||||||    
T  52635388 aagaagtcatttccaaaaactaaagtctaaacatccgctcaatagcagaaacaaatcttgtgccaaatcgttgcaaaatc-ctccaaaataaccatcaaa 52635486  T
Q  105 cttactataaacccatgtaatc 126  Q
    | ||| | |||| | |||||||    
T  52635487 cctaccaaaaactcgtgtaatc 52635508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 24867487 - 24867336
Alignment:
Q  5 aagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaaa 104  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||  |||||| || || |||| ||||||||||||||||||||||    
T  24867487 aagaagtcatctccaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgccaatccgttgaaaatcctctccaaaataaccatcaaa 24867388  T
Q  105 cttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatat 156  Q
    | || || |||||||||||| ||||||||||||||| |||||| ||||||||    
T  24867387 catattaaaaacccatgtaaccgcaccttaaacaagccacaccgtctaatat 24867336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 12155982 - 12156111
Alignment:
Q  4 caagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaa 103  Q
    ||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||  || |||||||||  |||||| ||||||||||||||||||    
T  12155982 caagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgtcaaaccattgcaaaacccctccaaaataaccatcaa 12156081  T
Q  104 acttactataaacccatgtaatcgcacctt 133  Q
    || ||| | |||| |  |||||||||||||    
T  12156082 acctaccaaaaactcgcgtaatcgcacctt 12156111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 26331815 - 26331678
Alignment:
Q  8 aagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaaactt 107  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||||  | | ||| | || |||||| |||| ||||||| |||||||| |    
T  26331815 aagtcatctccaaaaaccaaagtctaaacgtctgtgcaatagcataaacaaatcttgtacgaaatcgttgaaaaacatctctaaaataatcatcaaacct 26331716  T
Q  108 actataaacccatgtaatcgcaccttaaacaagtcaca 145  Q
    || | |||| ||||||| ||||||||||||||| ||||    
T  26331715 accaaaaactcatgtaaccgcaccttaaacaagccaca 26331678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 26331481 - 26331337
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| |||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||||  | | ||| | || |||||| |||| ||||||| |||    
T  26331481 aaccaataagtcatctccaaaaaccaaagtctaaacgtctgtgcaatagcataaacaaatcttgtacgaaatcgttgaaaaacatctctaaaataatcat 26331382  T
Q  101 caaacttactataaacccatgtaatcgcaccttaaacaagtcaca 145  Q
    ||||| ||| | ||| |||||||| | ||||||||||||| ||||    
T  26331381 caaacctaccaaaaatccatgtaacctcaccttaaacaagccaca 26331337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 42269214 - 42269112
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| ||||||||||||||||||||| || ||||||||| ||||||| |||||||| |||  ||||||||  ||  ||||||  ||||||||||||||    
T  42269214 aaccaaaaagtcatctccaaaaaccaaattctaaacgcctgagcaatagtagaaacaagtcttgtgccaaactgttgcaaaacccatccaaaataaccat 42269115  T
Q  101 caa 103  Q
    |||    
T  42269114 caa 42269112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 40680747 - 40680818
Alignment:
Q  131 cttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    |||||||||| |||||| ||||| || | ||||||||||||||  |||||||||||||||||||||||||||    
T  40680747 cttaaacaagccacaccgtctaacattcatgtatttgaaaaccttatcaacaacaaactcatagaagaaaac 40680818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 40600293 - 40600189
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| |||||||||||||||| ||||||   |||||||  ||||||||| |||||| |||  ||||||||| ||  ||||||  ||||||||||||||    
T  40600293 aaccaaaaagtcatctccaaaaatcaaagtatgaacgcctaagcaatagcaaaaacaagtcttgtgccaaaccgttgcaaaacccgtccaaaataaccat 40600194  T
Q  101 caaac 105  Q
    |||||    
T  40600193 caaac 40600189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 40600108 - 40600067
Alignment:
Q  161 gtatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  40600108 gtatttgaaaaccccattaacaacaaactcatagaagaaaac 40600067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 34574390 - 34574336
Alignment:
Q  149 tctaatatccgtgtatttga-aaaccccatcaacaacaaactcatagaagaaaac 202  Q
    ||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  34574390 tctaacatccatgtatttgagaaaccacatcaacaacaaactcatagaagaaaac 34574336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 42269028 - 42268988
Alignment:
Q  162 tatttgaaaaccccatcaacaacaaactcatagaagaaaac 202  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  42269028 tatttgaaaacccaattaacaacaaactcatagaagaaaac 42268988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 11470806 - 11470870
Alignment:
Q  134 aaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaacaaactcatagaagaa 199  Q
    |||||||  ||||| ||||| |||| |||||||||||| |||||||||||| ||| ||||||||||    
T  11470806 aaacaagctacaccgtctaaaatccatgtatttgaaaa-cccatcaacaacgaacccatagaagaa 11470870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 10670418 - 10670231
Alignment:
Q  5 aagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccatcaaa 104  Q
    |||||||||| ||||||| |||||||| ||| ||||||||||||||||||||||||||  || |||||| || |||||||||||||||||||| ||||||    
T  10670418 aagaagtcatatccaaaatccaaagtctaaatgcctgcgcaatagcagaaacaaatcttgtgtcaaaccgttgaaaaacctctccaaaataactatcaaa 10670319  T
Q  105 cttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtatttgaaaaccccatcaacaac-aaactcatagaagaaaa 201  Q
      ||||| ||| |||||||| |||||||||||||||||||||| ||||| |          ||||||||||||||||||| |||||||||||||||||    
T  10670318 tctactaaaaatccatgtaaccgcaccttaaacaagtcacaccgtctaaca----------tgaaaaccccatcaacaacaaaactcatagaagaaaa 10670231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 9566640 - 9566776
Alignment:
Q  67 ccaaaccattaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtattt 166  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||   |||||| |||| |||| |||||||    
T  9566640 ccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaactacaccagctaacatccatgtattt 9566739  T
Q  167 gaaaaccccatcaacaac-aaactcatagaagaaaac 202  Q
    ||||||| |||||||||| |||||| |||||||||||    
T  9566740 gaaaacctcatcaacaacaaaactcgtagaagaaaac 9566776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 24350611 - 24350486
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||||||||||||||||||||| |||||| |||| || |||||||||||||||||||| |  ||| ||||| ||  |||||| |||||||||||||||    
T  24350611 aaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaacaaattttgtgctaaaccgttgcaaaacccctccaaaataaccat 24350512  T
Q  101 caaacttactataaacccatgtaatc 126  Q
    ||||||||| | |||| | |||||||    
T  24350511 caaacttaccaaaaactcgtgtaatc 24350486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 30845122 - 30845254
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| ||||||||| |||||||||||||| |||| ||  |||||||||||||||||||||  || |||||| ||  |||||| |||||||||||||||    
T  30845122 aaccaaaaagtcatcttcaaaaaccaaagtctaaacacccacgcaatagcagaaacaaatcttgtgtcaaaccgttgcaaaacccctccaaaataaccat 30845221  T
Q  101 caaacttactataaacccatgtaatcgcacctt 133  Q
    ||||| ||| | ||| ||| |||| ||||||||    
T  30845222 caaacctaccaaaaatccaggtaaccgcacctt 30845254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 10772594 - 10772717
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| |||||||||||||||| ||||||| |||||| || ||||| |||||||||| |||  ||||||||| ||  ||||||  ||||||||||||||    
T  10772594 aaccaaaaagtcatctccaaaaatcaaagtctaaacgcttgagcaatggcagaaacaagtcttgtgccaaaccgttgcaaaacccatccaaaataaccat 10772693  T
Q  101 caaacttactataaacccatgtaa 124  Q
    ||||| ||| | |||||| |||||    
T  10772694 caaacctaccaaaaacccgtgtaa 10772717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 11366563 - 11366667
Alignment:
Q  67 ccaaaccattaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtattt 166  Q
    ||||||| |||||||||||||||||| |||||||||||| ||| | |||| ||||||| ||||| ||||| ||  ||||||| |||| ||||||||||||    
T  11366563 ccaaaccgttaaaaaacctctccaaa-taaccatcaaacctaccaaaaactcatgtaaccgcacattaaaaaac-cacaccagctaacatccgtgtattt 11366660  T
Q  167 gaaaacc 173  Q
    |||||||    
T  11366661 gaaaacc 11366667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 269760 - 269865
Alignment:
Q  67 ccaaaccattaaaaaacctctccaaaataaccatcaaacttactataaacccatgtaatcgcaccttaaacaagtcacaccatctaatatccgtgtattt 166  Q
    ||||||| |||||||||||||||||| |||||||||||| ||| | |||||||||||| ||||||||||||||  ||||| | |||| ||||||||||||    
T  269760 ccaaaccgttaaaaaacctctccaaa-taaccatcaaacctaccaaaaacccatgtaaccgcaccttaaacaaaccacactagctaacatccgtgtattt 269858  T
Q  167 gaaaacc 173  Q
    |||||||    
T  269859 gaaaacc 269865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 2816 - 2687
Alignment:
Q  1 aaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatagcagaaacaaatctcatgccaaaccattaaaaaacctctccaaaataaccat 100  Q
    |||||| || |||||||||||| |||||||| ||||||||| |||||||||||||||| |||  ||||||||| ||  ||| ||  || ||||||| |||    
T  2816 aaccaaaaattcatctccaaaacccaaagtctaaacgcctgagcaatagcagaaacaagtcttgtgccaaaccgttgcaaatcccatctaaaataatcat 2717  T
Q  101 caaacttactataaacccatgtaatcgcac 130  Q
    ||| | ||| | |||| ||||||| |||||    
T  2716 caatcctaccaaaaactcatgtaaccgcac 2687  T

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Target: scaffold0725 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 953 - 1006
Alignment:
Q  150 ctaatatccgtgtatttgaaaaccccatcaacaac-aaactcatagaagaaaac 202  Q
    |||| ||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  953 ctaacatccgtgtatttgaaaacctcatcaacaacaaaactcgtagaagaaaac 1006  T

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Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 2886 - 2958
Alignment:
Q  2 accaagaagtcatctccaaaaaccaaagtccaa--acgcctgcgcaatagcagaaacaaatctcatgccaaac 72  Q
    ||||| || ||||||||||||||||||||| ||  ||||| | ||||||||||||||||||||  ||||||||    
T  2886 accaaaaattcatctccaaaaaccaaagtctaaacacgcccgtgcaatagcagaaacaaatcttgtgccaaac 2958  T

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Target: scaffold0088 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 26872 - 26904
Alignment:
Q  155 atccgtgtatttgaaaaccccatcaacaacaaa 187  Q
    ||||||||||||||||||| |||||||||||||    
T  26872 atccgtgtatttgaaaacctcatcaacaacaaa 26904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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