View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3850_low_4 (Length: 325)
Name: NF3850_low_4
Description: NF3850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3850_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 15419349 - 15419649
Alignment:
| Q |
20 |
ctttgtaggatctttctttatgctgaagtaagcatctggattccttggttcgatgttgtgttttcgacaaaatggtacccataactgcaaacatagataa |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
15419349 |
ctttgtaggatctttctttatgttgaagtaagcatctggattccttggttcgatattgtgttttcgacaaaatggtacccataactgcaaacatggatta |
15419448 |
T |
|
| Q |
120 |
gttggttgtgtattatcatgaatctaaacagactaaaacatgctacattgaacaaaatgcttatatgtgaaacatgttccttattaaagaatataaacaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15419449 |
gttggttgtgtattatcatgaatctaaacagactaaaacatgctaaattgaacaaaatgcttatatgtgaaacatgttccttattaaagaatataaacaa |
15419548 |
T |
|
| Q |
220 |
acctcggcaaatttcacagcttcagccatggcttcaaaagtgagaatggcaccaccatcatctgaaatatagcatgagaccttttcaatagaataatcta |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15419549 |
acctcggcaaatttcacagcttcagccatggcttcaaaagtgagaatggcaccaccatcatctgaaatatagcatgagaccttttcaataggataatcta |
15419648 |
T |
|
| Q |
320 |
c |
320 |
Q |
| |
|
| |
|
|
| T |
15419649 |
c |
15419649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University