View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3850_low_6 (Length: 310)
Name: NF3850_low_6
Description: NF3850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3850_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 36 - 301
Target Start/End: Complemental strand, 6891667 - 6891402
Alignment:
| Q |
36 |
gaaactgggttggaagcatcaccatttttctcaacatctgtatctaaaactgggttggaagcatcatcaattttctcaacatctgtgtctgaaactaggt |
135 |
Q |
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|||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6891667 |
gaaactaggttggaagcatcatcaattttctcaacatctgtatctgaaactaggttggaagcatcatcaattttctcaacatctgtgtctgaaactaggt |
6891568 |
T |
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| Q |
136 |
tgcaagtatcatcagttttctcaactgtatctgagcaccgagtttggatgaggtagtgtgcgactgatttgtatcccaactgcaatacctaaaataagga |
235 |
Q |
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| T |
6891567 |
tgcaagtatcatcagttttctcaactgtatctgagcaccgagtttggatgaggtagtgtgcaactgatttgtatcccaactgcaatacctaaaataaaga |
6891468 |
T |
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| Q |
236 |
gatatttgagctacaactcgatcttttgaaagnnnnnnnngtaacacaattttagctaagaattat |
301 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6891467 |
gatatttgagctacaactcgatcttttgaaagaaaaaaaagtaacacaattttagctaagaattat |
6891402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 6862094 - 6861868
Alignment:
| Q |
24 |
gaccttttaacagaaactgggttggaagcatcaccatttttctcaacatctgtatctaaaactgggttggaagcatcatcaattttctcaacatctgtgt |
123 |
Q |
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||||||||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| | |
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| T |
6862094 |
gaccttttaactgaaactgggttggaagcatcatcaattttctcaacatctgtatctgaaactaggatggaagcatcatcaattttctcaacatctgtat |
6861995 |
T |
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| Q |
124 |
ctgaaactaggttgcaagtatcatcagttttct---caactgtatctgagcaccgagtttggatgaggtagtgtgcgactgatttgtatcccaactgcaa |
220 |
Q |
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| T |
6861994 |
ctaaaactgggttgcaagtatcatcatttatctcaacaactgtatctgagcgacgagtttggatgaggtagtgtgcgactgatttgtatcccaactgcaa |
6861895 |
T |
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| Q |
221 |
tacctaaaataaggagatatttgagct |
247 |
Q |
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| T |
6861894 |
tacctaaaataaggagatatttgagct |
6861868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 6891774 - 6891633
Alignment:
| Q |
19 |
gtaacgaccttttaacagaaactgggttggaagcatcaccatttttctcaacatctgtatctaaaactgggttggaagcatcatcaattttctcaacatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6891774 |
gtaacgaccttttaacagaaactgggttggaagcatcaccatttttctcaacatctgtatctaaaactgggttggaagcatcgtcaattttctcaacatc |
6891675 |
T |
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| Q |
119 |
tgtgtctgaaactaggttgcaagtatcatcagttttctcaac |
160 |
Q |
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| T |
6891674 |
cgtatctgaaactaggttggaagcatcatcaattttctcaac |
6891633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 6891711 - 6891588
Alignment:
| Q |
37 |
aaactgggttggaagcatcaccatttttctcaacatctgtatctaaaactgggttggaagcatcatcaattttctcaacatctgtgtctgaaactaggtt |
136 |
Q |
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||||||||||||||||||| || ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6891711 |
aaactgggttggaagcatcgtcaattttctcaacatccgtatctgaaactaggttggaagcatcatcaattttctcaacatctgtatctgaaactaggtt |
6891612 |
T |
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| Q |
137 |
gcaagtatcatcagttttctcaac |
160 |
Q |
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| ||| ||||||| |||||||||| |
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| T |
6891611 |
ggaagcatcatcaattttctcaac |
6891588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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