View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3850_low_7 (Length: 308)
Name: NF3850_low_7
Description: NF3850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3850_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 41293237 - 41292953
Alignment:
| Q |
7 |
tccaagaatataatgggtggttaagagatttatctataaaagtagtccataaaccaatttttaagagatttgaaggattaacttgatagattagtagtag |
106 |
Q |
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| T |
41293237 |
tccaataatataatgggtggttaagagatttatctataaaattagtccataaaccaatttttaagagatttgaaggattaacttgatagattagtagtag |
41293138 |
T |
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| Q |
107 |
tataaggattatttagtatatttctatagtttattcatcaaactggagagaatgtgatagttttgaaaccaaattgatggttaattatatttgaaagaat |
206 |
Q |
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| T |
41293137 |
tataaggattatttagtatatttctatagtttattcatcaaactggagagaatgtgatagttttgaaaccaaattgatggtttattatatttgaaagaat |
41293038 |
T |
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| Q |
207 |
aagttgagaggataggtgcagaaaatgaaagttagtataggttgaaatgaagtgtgtgaaaaagggtagaaatggtgttgtaagt |
291 |
Q |
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| T |
41293037 |
aagttgagaggataggtgcagaaaatgaaagttagtataggttgaaatgaagtgtgtgaaaaagggtagtaatggtgttgtaagt |
41292953 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 27938458 - 27938405
Alignment:
| Q |
76 |
ttgaaggattaacttgatagattagtagtagtataaggattatttagtatattt |
129 |
Q |
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| T |
27938458 |
ttgaaggactaacttgatagattgataatagtttaaggattatttattatattt |
27938405 |
T |
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