View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3851_high_1 (Length: 610)
Name: NF3851_high_1
Description: NF3851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3851_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 46613417 - 46612936
Alignment:
| Q |
19 |
ttgagatggagcaatggatgcttgaggcacaatgaaaaggagcaagatcatgatgaagaactggaatttagaggaagcgatgcggtatcaatgttcacat |
118 |
Q |
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| T |
46613417 |
ttgagatggagcaatggatgcttgaggcacaatgaaaaggagcaagatcatgacgaagaactggaatttagaggaagcgatgcggtatcaatgttcacat |
46613318 |
T |
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| Q |
119 |
gtggagaatcaatgttgttctttcttctcattagcatgatcatccagaaattgccaagttgcttgaaagattgaagaaatgggtggaatgaagtgaaagg |
218 |
Q |
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| T |
46613317 |
gtggagaatcaatgttgttctttcttctcattagcatgatcatccagaaattgccaagttgcttgaaagattgaagaaatgggtggaatgaagtgaaagg |
46613218 |
T |
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| Q |
219 |
agaaaaatgatgcattctattttcaagtgggattgaaacaccaaactcctgcaacaagtactgaaacacactatctggtatgcttgattgacatttacga |
318 |
Q |
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| T |
46613217 |
ataaaaatgatgcattctattttcaagtgggattgaaacaccaaactcctgcaacaagtactgaaacacactatctggtatgcttgattgacatttacga |
46613118 |
T |
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| Q |
319 |
aggaatggactagtggattaactattgacaacagcaacatgagttgaatattgatcaactattgagtattaactatttagtatttactagtgcttaatga |
418 |
Q |
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| T |
46613117 |
aggaatggactagtggattaactattgacaacatcaacatgagttgaatatttatcaactattgag--------------tatttactagtgcttgatga |
46613032 |
T |
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| Q |
419 |
cgccttcttcactaagtgtaataaaattgaatgcttggggaccaacttgcatgtttggatattgtcgatgtaaatctagagatgaagcacgaagac |
514 |
Q |
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| T |
46613031 |
cgccttcttcactaagtgtaataaaattgaatgcttggggaccaacttgcatgtttggatattgtcgatgtaaatctagagatgaagcacgaagac |
46612936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 593
Target Start/End: Complemental strand, 46612938 - 46612906
Alignment:
| Q |
561 |
gacagtgcccttgcttccacactgctaccacct |
593 |
Q |
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| T |
46612938 |
gacagtgcccttgcttccacactgctaccacct |
46612906 |
T |
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