View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3851_low_3 (Length: 242)
Name: NF3851_low_3
Description: NF3851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3851_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 9299649 - 9299431
Alignment:
| Q |
1 |
atggaaatgaaatgacatgagcaaagttgtgtcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcct |
100 |
Q |
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| T |
9299649 |
atggaaatgaaatgacatgagcaaagttgtgtcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcct |
9299550 |
T |
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| Q |
101 |
aagtcaaaatttgttccataccatttcaatgagagtatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtata |
200 |
Q |
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| T |
9299549 |
aagtcaaaatttgttccataccatttcaatgagagtatgtttgattgaatggaagatgcgggaaataaagcaacgcgatcaaacagtttgatgcagtata |
9299450 |
T |
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| Q |
201 |
caagatcagattcaatgat |
219 |
Q |
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| T |
9299449 |
caagatcagattcaatgat |
9299431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 9258096 - 9258275
Alignment:
| Q |
36 |
ctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
135 |
Q |
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| T |
9258096 |
ctgcagaggataaaataacgaatgtaatcttcttcttcgatttatgttcacatttcaagcatcctatgtcaaaatttgttcccgaccatgtcaacgagag |
9258195 |
T |
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| Q |
136 |
tatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaagatcagattcaa |
215 |
Q |
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| T |
9258196 |
acggttgtattgaatagtagatgcatcaaatgaggaaacgtgatcaaacaatttgatgcagtatactaagtcagattcaa |
9258275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 9467363 - 9467418
Alignment:
| Q |
80 |
tgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
135 |
Q |
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| T |
9467363 |
tgtttacatttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagag |
9467418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 9171020 - 9170928
Alignment:
| Q |
32 |
tcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccat |
124 |
Q |
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| T |
9171020 |
tcacctgctgaggttaaagtaatgagtgttatcctcttctttgttttgttctcacatttcaagcatcttatgtcaaaatttgttccagaccat |
9170928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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