View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_high_1 (Length: 1308)
Name: NF3852_high_1
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 601; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 16 - 738
Target Start/End: Complemental strand, 38719707 - 38718996
Alignment:
| Q |
16 |
tctttattaccatactatcttcttgacttacatctgtaactgatgaaccacaatctgaaaaactcctcattacatgcatattggttttgtaattagtatc |
115 |
Q |
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| T |
38719707 |
tctttattaccatagtatcttcttgacttacatctgtaactgatgaaccacaatctgaaaaactcctcattacatgcatattggttttgtaattagtatc |
38719608 |
T |
|
| Q |
116 |
catgtttgttacactcacagttatactttgttttggctttggagtaagaaatggttctgaaaatatatatcttagactcttagataattttgttatggat |
215 |
Q |
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| T |
38719607 |
catgtttgttacactcacagttatactttgttttggctttggagtaagaaatggttctgaaaatatatatcttagactcttagataattttgttatgga- |
38719509 |
T |
|
| Q |
216 |
atgatatgtaagagtatgtgattat----atagagagagttcagcgttgacgttggatttaggaggaattgcactttaaaactgagaatttgtcaaaact |
311 |
Q |
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| T |
38719508 |
----tatgtaagagtatgtgattatatagatagagagagttcagcgttgacgttggatttaggaggaattgcactttaaaactgagaatttgtcaaaact |
38719413 |
T |
|
| Q |
312 |
aaaagataaagtgaagggctgcgagtatagatagctgaatacttggtacgcagaattgttaaataatatacctacttgattgattaaattactatattgg |
411 |
Q |
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| T |
38719412 |
aaaagataaagtgaagggctgcgagtatagatagctgaatacttggtacgcagaattgttaaataatactcctacttgattgattaaattactata---- |
38719317 |
T |
|
| Q |
412 |
agtagtattttagttattgctagttactcnnnnnnnattttgaccttgctattttgtgttgaccctttgactaattacacgtatattcaactaagtttac |
511 |
Q |
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| T |
38719316 |
--tagtattttagttattgctagttactctttttttattttgaccttgctatttcgtgttgaccctttgactaattacacgtatattcaactaagtttac |
38719219 |
T |
|
| Q |
512 |
taaaataatagtaattaatgtcaaatagtcagaactaagaaggctttaacagtatttgggtttccagaaccaaaacggttcctgtatctggctttctggc |
611 |
Q |
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| T |
38719218 |
taaaataatagtaactaatgtcaaatagtcagaactaagaaggctttaacagtatttgggtttccagaaccaaaacggttcctgtatctggctttctggc |
38719119 |
T |
|
| Q |
612 |
tatgtctcaggtcaaacttccttcctagttgacattaattaattaaaggaaattgtttgcagatactcaaaacctctgaacttgtatgtaaagaatattt |
711 |
Q |
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| T |
38719118 |
tatgtctctggtcaaacttccttcctagttgac----attaattaaaggaaattgtttgcagatactgaaaacctctgaacttgtatgtaaagaatattt |
38719023 |
T |
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| Q |
712 |
cttattccttaaactagcttatcacaa |
738 |
Q |
| |
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| T |
38719022 |
cttattccttaaactagcttatcacaa |
38718996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 887 - 1298
Target Start/End: Complemental strand, 38718840 - 38718411
Alignment:
| Q |
887 |
aaacggctaagatctttttattcaaatattaaaaatgttttaattnnnnnnnnnnnnnnnnnnngaagtctcaatgcagaaacccacttctccatcattg |
986 |
Q |
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| T |
38718840 |
aaacggctaagatctttttattcaaatattataaatgttttaattaaaaaagaaaaagaaaaaagaaatctcaatgcagaaacccacttctccatcattg |
38718741 |
T |
|
| Q |
987 |
acattgatcacatctgccttcccattcacctactcgttcatcccctttctccatagtctcttcatcatgttcgtgtcatctgtaactgacataaagatat |
1086 |
Q |
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| T |
38718740 |
acattgatcacatctgccttcccattcacctactcgttcatcccctttctccatcgtctcttcttcgccgtcgtttcatctgtaactgacataaagatat |
38718641 |
T |
|
| Q |
1087 |
tgatttggttttctgtaattacatgcttccattaattaacaatacatctttttcaattgaggat------------------gaagaagcccactagttc |
1168 |
Q |
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| T |
38718640 |
tgatttggttttctgtaattacatgcttccattaattaacaatacatccttttcaattatgcatacacctcactcaattaaggatgaagcccactagttc |
38718541 |
T |
|
| Q |
1169 |
aaatcaattaatcgtaaagtagaatcatatgttaaaataaaacaagaagaaaaaggggaatacacgtatttggttggatcaactgtaagcttgatcttnn |
1268 |
Q |
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| T |
38718540 |
aaatcaattaatcgtaaagtagaatcatatgttaaaataaaacaagaagaaaaaggggaatacacgtatttggttggatcaactgtaagcttgatcttaa |
38718441 |
T |
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| Q |
1269 |
nnnnntaaaactgtaagcttcatgatgatg |
1298 |
Q |
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| T |
38718440 |
aaaaataaaactgtaagcttcatgatgatg |
38718411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 735 - 791
Target Start/End: Complemental strand, 38718977 - 38718921
Alignment:
| Q |
735 |
acaagagatgggatgagtaattaagaatgtttgtaaacaaaaaataattacgaatgt |
791 |
Q |
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| T |
38718977 |
acaagagatggaatgagtaattaagaatgtttgtaaacaaaaaataattacgaatgt |
38718921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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