View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3852_high_13 (Length: 421)

Name: NF3852_high_13
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3852_high_13
NF3852_high_13
[»] scaffold0082 (2 HSPs)
scaffold0082 (278-365)||(30701-30788)
scaffold0082 (1-69)||(14183-14251)
[»] scaffold0212 (2 HSPs)
scaffold0212 (74-148)||(27388-27462)
scaffold0212 (176-209)||(15709-15742)
[»] scaffold0015 (1 HSPs)
scaffold0015 (74-148)||(214810-214884)
[»] chr8 (1 HSPs)
chr8 (74-148)||(21957964-21958038)
[»] chr4 (1 HSPs)
chr4 (76-148)||(24749154-24749226)
[»] scaffold0108 (1 HSPs)
scaffold0108 (210-276)||(971-1037)
[»] chr2 (2 HSPs)
chr2 (75-144)||(32858357-32858426)
chr2 (176-209)||(36499550-36499583)
[»] chr5 (1 HSPs)
chr5 (104-134)||(42451549-42451579)


Alignment Details
Target: scaffold0082 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 30788 - 30701
Alignment:
Q  278 agcaccttttttcactttatcactggattgcgaacttacttatccttttgatgagaatgccactactcttacttactatcttcaaagc 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30788 agcaccttttttcactttatcactggattgcgaacttacttatccttttgatgagaatgccactactcttacttactatcttcaaagc 30701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0082; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14183 - 14251
Alignment:
Q  1 ctttttgtgctcgcatgtcctatgttttctacaaagatccacatatttgttgttccgttcaacactgtt 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14183 ctttttgtgctcgcatgtcctatgttttctacaaagatccacatatttgttgttccgttcaacgctgtt 14251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0212 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0212
Description:

Target: scaffold0212; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 27388 - 27462
Alignment:
Q  74 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27388 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 27462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0212; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 15742 - 15709
Alignment:
Q  176 ttcttgtagcagccaccgcttcggatcctgcacc 209  Q
    ||||||||||||||||||||||||||||||||||    
T  15742 ttcttgtagcagccaccgcttcggatcctgcacc 15709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 214810 - 214884
Alignment:
Q  74 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  214810 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 214884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 21958038 - 21957964
Alignment:
Q  74 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21958038 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 21957964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 24749226 - 24749154
Alignment:
Q  76 ttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 148  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24749226 ttgtaaagctcattcccgatcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 24749154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 971 - 1037
Alignment:
Q  210 gaaaagatctgttgacgtcagctatgtgatcactcaacgatcagtgctacagctcagcctgacctga 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  971 gaaaagatctgttgacgtcagctatgtgatcactcaacgatcagtgctacagctcagcctgacctga 1037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 32858426 - 32858357
Alignment:
Q  75 gttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatcttt 144  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| || |||||||||    
T  32858426 gttgcaaagctcattctcggtcttgcaacttggtttacatccgacaaagaaaaaagattctaatatcttt 32858357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 36499550 - 36499583
Alignment:
Q  176 ttcttgtagcagccaccgcttcggatcctgcacc 209  Q
    ||||||||||||||||||||||||||||||||||    
T  36499550 ttcttgtagcagccaccgcttcggatcctgcacc 36499583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 134
Target Start/End: Complemental strand, 42451579 - 42451549
Alignment:
Q  104 ttggtttacagccgacaaagaaaaaagagtc 134  Q
    |||||||||||||||||||||||||||||||    
T  42451579 ttggtttacagccgacaaagaaaaaagagtc 42451549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University