View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_high_18 (Length: 296)
Name: NF3852_high_18
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 29009018 - 29009272
Alignment:
| Q |
19 |
gtaacagtgtcaaatgaaattgaagaattagtttcagtgaaaatagtagcgtgcaaatgcaaattatatagaaatgtgaaggtgaatttgaataaaatga |
118 |
Q |
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| T |
29009018 |
gtaacagtatcaaatgcaattgaagaattagtttcagtgaaaattgtagcgtgcaaatgcaaattatatagaaatgtgaaggtgaatttgaataaaatga |
29009117 |
T |
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| Q |
119 |
aaccagaatcggaatttgaagaatttaatcaagaagttgaagcgaacatatatgatctttgcgcggttgaagagtttgttatgaattcagaacagagaat |
218 |
Q |
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| T |
29009118 |
aaccagaatcggaatttgaagaatgtaatcaagaagttgaagcgaacctatatgatctttgcgcggttgaagagtttgttatgaattcagaacagagaat |
29009217 |
T |
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| Q |
219 |
ttggttatgtacctgcaaattcagaaagtgaaatctcagagcaatgaagaagaag |
273 |
Q |
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| T |
29009218 |
gtggttatgtacctgcaaattcagaaagtgaaatctcagagcaatgaagaagaag |
29009272 |
T |
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