View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3852_high_20 (Length: 274)
Name: NF3852_high_20
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 11278766 - 11278517
Alignment:
| Q |
17 |
agtaacggtgaaaattctacctgattatcctgcggttttcttttgtaataagcaagtaaccgtgactccaaaacgaagtacctcatgtgaataaacgatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11278766 |
agtaacggtgaaaattctacctgattatcctgcggttttcttttgtaataagcaagtaaccgtgactccaaaacgaagtacctcatgtgaataaacgatc |
11278667 |
T |
|
| Q |
117 |
gaccgatttttcgccggccatatctcaccatccatccttcatacacgactttcgacgacatcggcacaagaatttcaaacttcgaaggaaaattcggaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11278666 |
gaccgatttttcgccggccatatctcaccatccatccttcatacacgactttcgacgacatcggcacaagaatttcaaacttcgaaggaaaattcggaac |
11278567 |
T |
|
| Q |
217 |
gaattggcagttttgccgccggcggaagctggagaagaagaatctctgct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11278566 |
gaattggcagttttgccgccggcggaagctggagaagaagaatctctgct |
11278517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University