View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_high_22 (Length: 266)
Name: NF3852_high_22
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 6283857 - 6283607
Alignment:
| Q |
1 |
caagtttgagccacccatcctttttacaagataagttcgaactattggctcacgaagacattgaagcttcttaacctcttctatatatagagataacttg |
100 |
Q |
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| T |
6283857 |
caagtttgatccacccatcctttttacaagataagttcaaactattggctcatgaagacattgaagcttcttaacctcttctata----gagataacttg |
6283762 |
T |
|
| Q |
101 |
tgtagcaagttatctagccagttagttataactaattgtcttaggatttgtatagcatatacaacacttgtactataactatcctacacctctatgaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6283761 |
tgtagcaagttatctagccagttagttataactaattgtctaagaatttgtatagcatatacaacacttgtactataactatcctacacctctatgaact |
6283662 |
T |
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| Q |
201 |
atatataaggtgtattgtactcttggatcaaataatgagaatttatttcattcat |
255 |
Q |
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| T |
6283661 |
atatataaggtgtattgttctcttggatcaaataatgagaatttatttcattcat |
6283607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 13757332 - 13757425
Alignment:
| Q |
162 |
caacacttgtactataactatcctacacctctatgaactatatataaggtgtattgtactcttggatcaaataatgagaatttatttcattcat |
255 |
Q |
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| T |
13757332 |
caacacttgtacaataactatcctacacctctatgaactctatataatgtgtattctactctttgatcaagtaatgcaaattcatttcattcat |
13757425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 38644542 - 38644477
Alignment:
| Q |
159 |
atacaacacttgtactataactatcctacacctctatgaactatatataaggtgtattgtactctt |
224 |
Q |
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| T |
38644542 |
atacatcatttgtaccataactatcctacacctccatgaactctatataaggtgtattgtactctt |
38644477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 39845243 - 39845124
Alignment:
| Q |
121 |
gttagttataactaattgtcttaggatttgtatagcatatacaacacttgtactataactatcctacacctctatgaactatatataaggtgtattgtac |
220 |
Q |
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||||||| ||||||| ||| |||| || |||||| ||||| |||| |||| ||||||||||||||||| ||||| |||||| ||| |||| ||||| |
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| T |
39845243 |
gttagttgtaactaactgttttagagttagtatagaatatagaaca--tgtatcataactatcctacaccttcatgaattatatacaagctgtaatgtac |
39845146 |
T |
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| Q |
221 |
tcttggatcaaataatgagaat |
242 |
Q |
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||| ||||||||||||||||| |
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| T |
39845145 |
tctatgatcaaataatgagaat |
39845124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 1143905 - 1143963
Alignment:
| Q |
89 |
agagataacttgtgtagcaagttatctagccagttagttataactaattgtcttaggat |
147 |
Q |
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| T |
1143905 |
agagataacttgttccacaagttatctagctagttagttataactaactgtattaggat |
1143963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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