View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_high_23 (Length: 251)
Name: NF3852_high_23
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 20479454 - 20479289
Alignment:
| Q |
1 |
acaactgctgctatggctacaccaatacctctgttgaacaccaatctaaaggaatcgaaaagaaagaatgtcaactctctgacaccgacaacacggaagc |
100 |
Q |
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| T |
20479454 |
acaactgctgctacggctacaccaatacctctgttgaacaccaatctaaaggaatcgaaaagaaagaatgtcaactctctgacaccgacaacacggaagc |
20479355 |
T |
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| Q |
101 |
tacattgccaatctagcgaaaagtaaatgtgtcaacgataactcgtcaaagtagtccaaggatttt |
166 |
Q |
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| T |
20479354 |
aacattgccaatctagcgaaaagtaaatgtgtcaatgataactcgtcaaagtagtccaaggatttt |
20479289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 20478853 - 20478802
Alignment:
| Q |
184 |
tcaatttattagttatatacttcgtattaacctgcaagttgaatcaaaatag |
235 |
Q |
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| T |
20478853 |
tcaatttattagttatatacttcgtattaacctgcaagttgaatcaaaatag |
20478802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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