View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3852_high_25 (Length: 232)

Name: NF3852_high_25
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3852_high_25
NF3852_high_25
[»] chr7 (6 HSPs)
chr7 (105-226)||(22643981-22644104)
chr7 (117-230)||(3632825-3632938)
chr7 (117-226)||(33614203-33614312)
chr7 (177-230)||(18534305-18534358)
chr7 (128-223)||(40236636-40236730)
chr7 (33-83)||(3632712-3632762)
[»] chr4 (10 HSPs)
chr4 (117-226)||(52457490-52457599)
chr4 (105-226)||(34412866-34412988)
chr4 (117-230)||(35106077-35106190)
chr4 (1-87)||(34412752-34412837)
chr4 (173-230)||(40547591-40547648)
chr4 (173-228)||(31787235-31787290)
chr4 (33-83)||(35105968-35106018)
chr4 (197-230)||(50135782-50135815)
chr4 (178-230)||(8718723-8718775)
chr4 (19-83)||(52457666-52457730)
[»] scaffold0287 (2 HSPs)
scaffold0287 (117-230)||(13147-13260)
scaffold0287 (33-83)||(13323-13373)
[»] chr1 (4 HSPs)
chr1 (117-226)||(38674294-38674404)
chr1 (174-225)||(8261508-8261559)
chr1 (178-226)||(32454520-32454568)
chr1 (178-226)||(51048065-51048113)
[»] chr8 (14 HSPs)
chr8 (141-230)||(10405769-10405858)
chr8 (141-213)||(22914392-22914465)
chr8 (173-230)||(3955331-3955388)
chr8 (177-230)||(15358621-15358674)
chr8 (177-230)||(19439084-19439137)
chr8 (177-230)||(19575233-19575286)
chr8 (171-230)||(9636168-9636227)
chr8 (174-225)||(37513239-37513290)
chr8 (173-230)||(13637080-13637137)
chr8 (173-230)||(13737493-13737550)
chr8 (178-226)||(6295420-6295468)
chr8 (178-230)||(19222399-19222451)
chr8 (178-226)||(25980721-25980769)
chr8 (178-226)||(38783623-38783671)
[»] chr3 (4 HSPs)
chr3 (141-210)||(24695850-24695920)
chr3 (141-230)||(45059197-45059287)
chr3 (171-230)||(18370958-18371017)
chr3 (174-225)||(39692514-39692565)
[»] chr6 (2 HSPs)
chr6 (178-230)||(17772838-17772890)
chr6 (171-225)||(5045537-5045591)
[»] chr5 (3 HSPs)
chr5 (141-228)||(17888211-17888298)
chr5 (178-228)||(1156948-1156998)
chr5 (178-223)||(6377527-6377572)
[»] chr2 (3 HSPs)
chr2 (178-225)||(38587191-38587238)
chr2 (171-225)||(11738663-11738717)
chr2 (178-223)||(13863251-13863296)
[»] scaffold0072 (1 HSPs)
scaffold0072 (181-225)||(46637-46681)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 22644104 - 22643981
Alignment:
Q  105 tcaacaatttaa--taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatca 202  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  22644104 tcaacaatttaaattaaaaattggattaagttatttaataaattaatttttattgaaggtttattagttaggggtattttggtacttctaaaaataatca 22644005  T
Q  203 acacttctttcttctctatttctt 226  Q
    ||||||||||||||||||||||||    
T  22644004 acacttctttcttctctatttctt 22643981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 3632825 - 3632938
Alignment:
Q  117 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaacacttctttcttc 216  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||| |||| |||||||    
T  3632825 taaaaattgaattaagttatttaataaattaattttgattgaaggtttattaattaggggcattttggtacttctaaaaagaatcaatacttttttcttc 3632924  T
Q  217 tctatttcttctat 230  Q
    | ||||||||||||    
T  3632925 tttatttcttctat 3632938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 33614312 - 33614203
Alignment:
Q  117 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaacacttctttcttc 216  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| ||  |||||| |||||||||| |||||||||| || |||||||    
T  33614312 taaaaattggattaaattatttaataaattaattttgattgaaggtttattaattatgggtattttgctacttctaaagataatcaacatttatttcttc 33614213  T
Q  217 tctatttctt 226  Q
    ||||||||||    
T  33614212 tctatttctt 33614203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 18534358 - 18534305
Alignment:
Q  177 cattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||| ||||||  |||| ||||||||||||||||||||||||||||||||||    
T  18534358 cattttagtactttcaaaagtaatcaacacttctttcttctctatttcttctat 18534305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 40236730 - 40236636
Alignment:
Q  128 ttaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaacacttctttcttctctattt 223  Q
    ||||||||||||| ||||||||||||||||||| ||| ||| || ||| ||||||||||||| | |  ||||  |||| ||||||| |||||||||    
T  40236730 ttaagttatttaaaaaattaattttgattgaagattt-ttaattgggggcattttggtacttatcactataacaaacatttctttcatctctattt 40236636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 3632712 - 3632762
Alignment:
Q  33 aaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 83  Q
    ||||||||| ||| |||||||||||||||| | |||||||||||| |||||    
T  3632712 aaaaaatgagttctaatttatttggatgaagtcacaaattaatgaaataat 3632762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 52457599 - 52457490
Alignment:
Q  117 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaacacttctttcttc 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||||    
T  52457599 taaaaattggattaagttatttaataaattaattttgattgaaggtttattaattaggggtattttggtacttctgaaaataatcaacacttctttcttc 52457500  T
Q  217 tctatttctt 226  Q
    ||||||||||    
T  52457499 tctatttctt 52457490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 34412866 - 34412988
Alignment:
Q  105 tcaacaattta--ataaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatca 202  Q
    |||||||||||  ||| || |||||||||||||||||| ||||||||||||||||||||||||||| ||||||  ||||| |||||| ||||||||||||    
T  34412866 tcaacaatttagaatagaaattggattaagttatttaacaaattaattttgattgaaggtttattaattaggg-tattttcgtacttttaaaaataatca 34412964  T
Q  203 acacttctttcttctctatttctt 226  Q
    ||| ||||||| ||||||||||||    
T  34412965 acaattctttcatctctatttctt 34412988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 35106077 - 35106190
Alignment:
Q  117 taaaagttggattaagttatttaataaattaattttgattgaaggttt-attagttagggacattttggtacttctaaaaataatcaacacttctttctt 215  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||| |||| | ||||  |||||||||||| |||||||||||||||||||||| ||    
T  35106077 taaaaattggattaagttatttaataaattaactttgatcgaaggttttattattaagggt-attttggtacttttaaaaataatcaacacttctttttt 35106175  T
Q  216 ctctatttcttctat 230  Q
    |||||||||||||||    
T  35106176 ctctatttcttctat 35106190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 34412752 - 34412837
Alignment:
Q  1 tcttattaataagtagagtttcaataagaaacaaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataatcttc 87  Q
    |||||||||||||  |||||||||||||||  ||||||||| ||| |||||||||||||||||| |||||||||| | |||||||||    
T  34412752 tcttattaataagatgagtttcaataagaat-aaaaaatgagttctaatttatttggatgaaattacaaattaattaaataatcttc 34412837  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 40547591 - 40547648
Alignment:
Q  173 gggacattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||||    
T  40547591 gggacattttagtactttcaaaagtaatcaacacttctttcttctctatttcttctat 40547648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 31787290 - 31787235
Alignment:
Q  173 gggacattttggtacttctaaaaataatcaacacttctttcttctctatttcttct 228  Q
    |||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||    
T  31787290 gggacattttagtacttttaaaagtaatcaacatttctttcttctctatttcttct 31787235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 35105968 - 35106018
Alignment:
Q  33 aaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 83  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||| |||||    
T  35105968 aaaaaatgaattctaatttatttggatgaaattacaaattaatgaaataat 35106018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 50135782 - 50135815
Alignment:
Q  197 taatcaacacttctttcttctctatttcttctat 230  Q
    ||||||||||||||||||||||||||||||||||    
T  50135782 taatcaacacttctttcttctctatttcttctat 50135815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 8718775 - 8718723
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||||||||||||||| |||||||||||||| ||| | |||||||| ||||    
T  8718775 attttggtacttctaaaactaatcaacacttctatctcccctatttctcctat 8718723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 52457730 - 52457666
Alignment:
Q  19 tttcaataagaaacaaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 83  Q
    ||||||||||||  ||||| ||| ||| |||||||||||||||| | |||||||||||| |||||    
T  52457730 tttcaataagaataaaaaattgagttctaatttatttggatgaagttacaaattaatgaaataat 52457666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 13260 - 13147
Alignment:
Q  117 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaacacttctttcttc 216  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||| |||| |||||||    
T  13260 taaaaattgaattaagttatttaataaattaattttgattgaaggtttattaattaggggcattttggtacttctaaaaagaatcaatacttttttcttc 13161  T
Q  217 tctatttcttctat 230  Q
    | ||||||||||||    
T  13160 tttatttcttctat 13147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 13373 - 13323
Alignment:
Q  33 aaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 83  Q
    ||||||||| ||| |||||||||||||||| | |||||||||||| |||||    
T  13373 aaaaaatgagttctaatttatttggatgaagtcacaaattaatgaaataat 13323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 38674404 - 38674294
Alignment:
Q  117 taaaagttggattaagttatttaataaattaa-ttttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaacacttctttctt 215  Q
    ||||| ||| |||||||||||||||||||||| |||| |||||| |||||||| ||||||  |||||||||||| |||||||||||||||||||||||||    
T  38674404 taaaaattgaattaagttatttaataaattaagttttcattgaatgtttattaattaggggtattttggtacttttaaaaataatcaacacttctttctt 38674305  T
Q  216 ctctatttctt 226  Q
    |||||||||||    
T  38674304 ctctatttctt 38674294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 8261508 - 8261559
Alignment:
Q  174 ggacattttggtacttctaaaaataatcaacacttctttcttctctatttct 225  Q
    ||||||| | ||||||  ||||||||||||||||||| ||||||||||||||    
T  8261508 ggacattcttgtactttcaaaaataatcaacacttctctcttctctatttct 8261559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 32454520 - 32454568
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctatttctt 226  Q
    ||||||||| || | |||||| ||||||||||| |||||||||||||||    
T  32454520 attttggtattttttaaaatagtcaacacttctctcttctctatttctt 32454568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 51048065 - 51048113
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctatttctt 226  Q
    ||||| |||||| || | ||||||||||||||| |||||||||||||||    
T  51048065 atttttgtacttttagatataatcaacacttctctcttctctatttctt 51048113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 10405858 - 10405769
Alignment:
Q  141 taaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||||||||||||  |||||||  || | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10405858 taaattaattttgatccaaggttttctattaagggacattttggtacttctaaaaataatcaacacttctctcttctctatttcttctat 10405769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 22914392 - 22914465
Alignment:
Q  141 taaattaattttgattgaaggtttattagttagggacattttggtacttcta-aaaataatcaacacttctttc 213  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||||| || |||||||||||||||||||||    
T  22914392 taaattaattttgattgaaggtttattaattaggggtattttggtacttttacaaaataatcaacacttctttc 22914465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 3955388 - 3955331
Alignment:
Q  173 gggacattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||||||| ||||||  |||| |||||||||||| |||||||||||||||||||||    
T  3955388 gggacattttagtactttcaaaagtaatcaacacttatttcttctctatttcttctat 3955331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 15358621 - 15358674
Alignment:
Q  177 cattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||| ||||||  |||| ||||||||||||||||||||||||||||||||||    
T  15358621 cattttagtactttcaaaagtaatcaacacttctttcttctctatttcttctat 15358674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 19439137 - 19439084
Alignment:
Q  177 cattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||| ||||||  |||| ||||||||||||||||||||||||||||||||||    
T  19439137 cattttagtactttcaaaagtaatcaacacttctttcttctctatttcttctat 19439084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 19575286 - 19575233
Alignment:
Q  177 cattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||| ||||||  |||| ||||||||||||||||||||||||||||||||||    
T  19575286 cattttagtactttcaaaagtaatcaacacttctttcttctctatttcttctat 19575233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 9636168 - 9636227
Alignment:
Q  171 tagggacattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    ||||| |||| | |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  9636168 taggggcattatagtacttttaaaaataaacaacacttctctcttctctatttcttctat 9636227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 37513239 - 37513290
Alignment:
Q  174 ggacattttggtacttctaaaaataatcaacacttctttcttctctatttct 225  Q
    ||||||||| ||||||  ||||||||||||||||||| ||||||||||||||    
T  37513239 ggacatttttgtactttcaaaaataatcaacacttctctcttctctatttct 37513290  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 13637080 - 13637137
Alignment:
Q  173 gggacattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||||||| ||||||  |||| |||||||||||| |||||||| ||||||||||||    
T  13637080 gggacattttagtactttcaaaagtaatcaacacttatttcttctttatttcttctat 13637137  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 13737493 - 13737550
Alignment:
Q  173 gggacattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||||||| ||||||  |||| |||||||||||| |||||||| ||||||||||||    
T  13737493 gggacattttagtactttcaaaagtaatcaacacttatttcttctttatttcttctat 13737550  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 6295468 - 6295420
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctatttctt 226  Q
    ||||| |||||| |||||||||||||||||||| ||||||| |||||||    
T  6295468 atttttgtacttttaaaaataatcaacacttctctcttctcaatttctt 6295420  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 19222399 - 19222451
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||||||| | | ||||||| ||||||||||||||||||||| ||||||||    
T  19222399 attttggtacatttcaaaataaccaacacttctttcttctctatctcttctat 19222451  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 25980721 - 25980769
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctatttctt 226  Q
    |||||||||||   ||||||||| |||||||||||||||||||||||||    
T  25980721 attttggtactataaaaaataattaacacttctttcttctctatttctt 25980769  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 38783623 - 38783671
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctatttctt 226  Q
    ||||| |||||| || | ||||||||||||||| |||||||||||||||    
T  38783623 atttttgtacttttagatataatcaacacttctctcttctctatttctt 38783671  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 24695920 - 24695850
Alignment:
Q  141 taaattaattttgattgaaggtttatt-agttagggacattttggtacttctaaaaataatcaacacttct 210  Q
    |||||||||||||||||||||||| || | | |||| ||||||||||||||||||||||||||||||||||    
T  24695920 taaattaattttgattgaaggtttttttaataaggggcattttggtacttctaaaaataatcaacacttct 24695850  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 45059197 - 45059287
Alignment:
Q  141 taaattaattttgattgaaggtttatt-agttagggacattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    |||||||||||||||||||| ||| || | | ||||  ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  45059197 taaattaattttgattgaagttttttttaataaggggtattttggtacttctagaaataatcaacacttctctcttccctatttcttctat 45059287  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 18370958 - 18371017
Alignment:
Q  171 tagggacattttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    ||||| |||| | |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  18370958 taggggcattatagtacttttaaaaataaacaacacttctctcttctctatttcttctat 18371017  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 39692514 - 39692565
Alignment:
Q  174 ggacattttggtacttctaaaaataatcaacacttctttcttctctatttct 225  Q
    ||||||||| ||||||  ||||||||||||||||||| ||||||||||||||    
T  39692514 ggacatttttgtactttcaaaaataatcaacacttctctcttctctatttct 39692565  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 17772838 - 17772890
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctatttcttctat 230  Q
    ||||| ||||||  |||| ||||||||||||||||||||||||||||||||||    
T  17772838 attttagtactttcaaaagtaatcaacacttctttcttctctatttcttctat 17772890  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 5045591 - 5045537
Alignment:
Q  171 tagggacattttggtacttctaaaaataatcaacacttctttcttctctatttct 225  Q
    ||||| ||| ||||||||| || |||||||||||||||||||||  |||||||||    
T  5045591 tagggccatcttggtacttttataaataatcaacacttctttctcttctatttct 5045537  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 17888211 - 17888298
Alignment:
Q  141 taaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaacacttctttcttctctatttcttct 228  Q
    |||||||||||| ||  ||||||| | | ||||||  |||||||||| | | || |||||||||| ||||||||||||||| ||||||    
T  17888211 taaattaatttttatataaggtttttcacttaggggtattttggtacatttcaatataatcaacatttctttcttctctatctcttct 17888298  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 1156948 - 1156998
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctatttcttct 228  Q
    ||||| ||| || ||||||||| |||||||||| |||||||||||||||||    
T  1156948 attttagtatttttaaaaataaccaacacttctctcttctctatttcttct 1156998  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 6377572 - 6377527
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctattt 223  Q
    ||||| ||||||| |||||||||||||||||||||||  |||||||    
T  6377572 atttttgtacttccaaaaataatcaacacttctttctcttctattt 6377527  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 38587238 - 38587191
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctatttct 225  Q
    ||||| |||||| |||||||||||||||||||| ||||||| ||||||    
T  38587238 atttttgtacttttaaaaataatcaacacttctctcttctcaatttct 38587191  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 11738717 - 11738663
Alignment:
Q  171 tagggacattttggtacttctaaaaataatcaacacttctttcttctctatttct 225  Q
    |||||||||| | |||||| |||| |||| |||||||||| ||||||||||||||    
T  11738717 tagggacattatagtacttttaaatataaacaacacttctctcttctctatttct 11738663  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 13863296 - 13863251
Alignment:
Q  178 attttggtacttctaaaaataatcaacacttctttcttctctattt 223  Q
    ||||| |||||| |||||||||||||||||||| ||||||| ||||    
T  13863296 atttttgtacttttaaaaataatcaacacttctctcttctcaattt 13863251  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 46681 - 46637
Alignment:
Q  181 ttggtacttctaaaaataatcaacacttctttcttctctatttct 225  Q
    ||||||||| || |||||||||||||||||||||  |||||||||    
T  46681 ttggtacttttataaataatcaacacttctttctcttctatttct 46637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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