View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3852_high_4 (Length: 699)
Name: NF3852_high_4
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 17663693 - 17664015
Alignment:
| Q |
19 |
tgagataccgtcgatgctgtcatctaattttccttagttataatatcatcatcgattattgaacagtttgctgacacg-atatatataaaatttagatta |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
17663693 |
tgagataccgtggatgctgtcatctaattttccttagttataatatcatcatcgattattgaacagtttgctgagacatatatatataaattttagattt |
17663792 |
T |
|
| Q |
118 |
tcaatttccaccttttgtgtttgtcttaatcttctaattttgtttgtgtgattctaaagaggttatgtgcactaagctagtatgaaaatataatggaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
17663793 |
tcaatttccaccttttgtgtttgtcttaatcttctaattttgtttgtgtgattctaaataggttatgtgcagtaagctagtgtaaaaatataatggaatt |
17663892 |
T |
|
| Q |
218 |
gagggttgaaattgatggagatgttgcttatttggaaaaatgtctagatgagtttagtgtggaaaatatgtaataataataattggtcttttatttgatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17663893 |
gagggttgaaattgatggagatgttgcttatttggaaaaatgtctagatgagtttagtgtggaaaatatgtaatgataataattggtcttttatttgatt |
17663992 |
T |
|
| Q |
318 |
gatttgaatgtagaggtttttat |
340 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
17663993 |
gatttgaatgcagaggtttttat |
17664015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 17700286 - 17699954
Alignment:
| Q |
19 |
tgagataccgtcgatgctgtcatctaattttccttagttataatatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17700286 |
tgagataccgtcgatgctgtcatctaattttccttagttataatatcatcgtcgattattgaacagtttgctgacacgatatatataaattttagattat |
17700187 |
T |
|
| Q |
119 |
caatttccaccttttgtgtttgtcttaatcttctaattttgtttgtgtgattctaaagaggttatgtgcactaagctagtatgaaaatataatggaattg |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17700186 |
caatttccaccttttgtggttgtcttaatcttctaattttgtttgtgtgaatctaaataggttatgtgcactaagctagtatgaaaatataatggaattg |
17700087 |
T |
|
| Q |
219 |
agggttgaaattgatggagatgttgcttatttggaaaaatgtctagatgagt------------------ttagtgtggaaaatatgtaataataataat |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
17700086 |
agggttgaaattaatggagatgttgcttatttggaaaaatttctagatgagtttactgtcaaagagtggcttaatgtggaaaatatgtaataataataat |
17699987 |
T |
|
| Q |
301 |
tggtcttttatttgattgatttgaatgtagagg |
333 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
17699986 |
tgggcttttatttgattgatttgaatgtagagg |
17699954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 352 - 474
Target Start/End: Original strand, 17664147 - 17664268
Alignment:
| Q |
352 |
atttctaatactttcccctttccgcttcttcgtgtagtatgaatatgtaaagtgtaaaccaaataatatctgaaaagaagtagagtgtttctgaaaagag |
451 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17664147 |
atttctaatactttcccctttctgcttcttcgtgtagtatgaatatgtaaagtgtaaaccaaataatatctgaaaagaagtagagtgtttctgaaaagag |
17664246 |
T |
|
| Q |
452 |
tcaacagagttggttgattgaat |
474 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
17664247 |
tcaacag-gttggttgattgaat |
17664268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 62 - 272
Target Start/End: Complemental strand, 38226888 - 38226678
Alignment:
| Q |
62 |
tatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttctaattttgtt |
161 |
Q |
| |
|
||||||||| |||||||| || |||||| ||| |||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
38226888 |
tatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttctaattttgtt |
38226789 |
T |
|
| Q |
162 |
tgtgtgattctaaagaggttatgtgcactaagctagtatgaaaatataatggaattgagggttgaaattgatggagatgttgcttatttggaaaaatgtc |
261 |
Q |
| |
|
|| || | |||| ||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||| ||||| ||| ||| |||||| |
|
|
| T |
38226788 |
tgagttaaactaactaggttatttgcactaaataagtatgaaaatatgatggagttgagggttgaaattgaaggagatgctgcttgttttgaagaatgtc |
38226689 |
T |
|
| Q |
262 |
tagatgagttt |
272 |
Q |
| |
|
||||||||||| |
|
|
| T |
38226688 |
tagatgagttt |
38226678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 21899027 - 21898915
Alignment:
| Q |
55 |
gttataatatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttctaa |
154 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21899027 |
gttataatatcattatggattattgaacagtttgctgacacgatttatataaattttgg-ttatcaatttccaccttttgtgtttgtcttaatcttctaa |
21898929 |
T |
|
| Q |
155 |
ttttgtttgtgtga |
168 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21898928 |
ttttgtttgtgtga |
21898915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 54 - 273
Target Start/End: Complemental strand, 22663561 - 22663342
Alignment:
| Q |
54 |
agttataatatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttcta |
153 |
Q |
| |
|
||||||||||| || || ||||||| | ||||||| | ||| ||||||| || ||||| ||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
22663561 |
agttataatattattatggattatttagcagtttgtttacagaatatataaaatttttaggttatccatttccaccttttgtgtttgtgttaatcttcta |
22663462 |
T |
|
| Q |
154 |
attttgtttgtgtgattctaaagaggttatgtgcactaagctagtatgaaaatataatggaattgagggttgaaattgatggagatgttgcttatttgga |
253 |
Q |
| |
|
||||||||||||||| || || ||| || |||||||| ||| ||||||||| ||| | | ||||||| |||||||||||||| | ||||||||| |
|
|
| T |
22663461 |
attttgtttgtgtgaatcataattggtaatttgcactaaattagcatgaaaataggatgaagtagagggtttgaattgatggagatgctatttatttgga |
22663362 |
T |
|
| Q |
254 |
aaaatgtctagatgagttta |
273 |
Q |
| |
|
| ||||| ||||||| |||| |
|
|
| T |
22663361 |
agaatgtttagatgaattta |
22663342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 27777752 - 27777867
Alignment:
| Q |
53 |
tagttataatatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttct |
152 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||| ||| |||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
27777752 |
tagttaaaatatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttccatcttttacatttgtcttaatcttct |
27777851 |
T |
|
| Q |
153 |
aattttgtttgtgtga |
168 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
27777852 |
tgttttgtttgagtga |
27777867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 27782199 - 27782092
Alignment:
| Q |
61 |
atatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttctaattttgt |
160 |
Q |
| |
|
|||||||||| |||||||| || || ||| ||| |||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
27782199 |
atatcatcatgaattattgagcaattcgcttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgt |
27782100 |
T |
|
| Q |
161 |
ttgtgtga |
168 |
Q |
| |
|
||| |||| |
|
|
| T |
27782099 |
ttgagtga |
27782092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 484 - 531
Target Start/End: Original strand, 17664348 - 17664395
Alignment:
| Q |
484 |
agtttagcagaagaaaatgaagtctgcattagttaatttcaagcattt |
531 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
17664348 |
agtttagcagaagaaagtgaagtctgaattagttaatttcaagcattt |
17664395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 17699795 - 17699758
Alignment:
| Q |
404 |
tgtaaaccaaataatatctgaaaagaagtagagtgttt |
441 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17699795 |
tgtaaaccaaataatatctcaaaagaagtagagtgttt |
17699758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 35250047 - 35249931
Alignment:
| Q |
52 |
ttagttataatatcatcatcgattattgaacagtttgctgacacgatatatataaaatttagattatcaatttccaccttttgtgtttgtcttaatcttc |
151 |
Q |
| |
|
||||||| ||||||||||| |||||||| || |||||| ||| ||||||||| | ||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
35250047 |
ttagttaaaatatcatcatgaattattgagcaatttgcttacaacatatatatagagtttagattatcaattattaccttttacatttgtcttagtcttc |
35249948 |
T |
|
| Q |
152 |
taattttgtttgtgtga |
168 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
35249947 |
taattttgtttgagtga |
35249931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 490 - 522
Target Start/End: Original strand, 29708826 - 29708858
Alignment:
| Q |
490 |
gcagaagaaaatgaagtctgcattagttaattt |
522 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
29708826 |
gcagaagaaactgaagtctgcattagttaattt |
29708858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University