View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_high_6 (Length: 495)
Name: NF3852_high_6
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 2732422 - 2732903
Alignment:
| Q |
1 |
ccccatatcctattggcaagtctctatataaaatatggaaaggaatattaggacgctagaaccatcattttacaacaattattgatcaaatacctttaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2732422 |
ccccatatcctattggcaagtctctatataaaatatggaaaggaatagtaggacgctagaaccatcattttacaacaattattgatcaaataactttaat |
2732521 |
T |
|
| Q |
101 |
gtttcacttaccctagagcagatataatccattccctgagtgttcgagcattcaacatggtttcagcagtcgtaaaagtcttcgacacaaccacaactgc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2732522 |
gtttcacttaccctagagcggatataatccattccctgagtgttcgagcattcaacatggtttcagcagtcgtaaaagtcttcgacacaaccacaactgc |
2732621 |
T |
|
| Q |
201 |
agaaataagaagaattgcaaccatgtaaaacaaaagatggacccgatctcttaactcaaatatgaaggaaaataagaaaagtgaaaataatctatttacc |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2732622 |
agaaataagaagaattgcaaccatataaaacaaaagatggacccgatctcttcactcaaatatgaaggaaaataagaaaagtgaaaataatctatttacc |
2732721 |
T |
|
| Q |
301 |
tagtgttgtttcaggatttaatcctgtgattgttttagctacatcaattggatcaacatttgcaagactgtacatagaagcaaatacacatgagaggttg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2732722 |
tagtgttgtttcaggatttaatcctgtgattgttttagctacatcaattggatcaacatttgcaagactgtgcatagaagcaaatacacatgagaggttg |
2732821 |
T |
|
| Q |
401 |
atttcatgaaaagacgtggttttcttaatttgtagctttagtaagacatttttaacagcacatatcacaataatattgttaa |
482 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2732822 |
atttcatgaaaagacgtggttttcttaatgtgtagctttagtaagacatttctaacagcacatatcacaataatattgttaa |
2732903 |
T |
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