View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3852_high_7 (Length: 471)
Name: NF3852_high_7
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_high_7 |
 | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0522 (1 HSPs) |
| | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 194 - 452
Target Start/End: Complemental strand, 46512246 - 46511988
Alignment:
| Q |
194 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc |
293 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46512246 |
caggatgcacaacgcgtatgattatttcacttgatcgaaagatagggaaatataagtttgttgactttgaagctcaacataaccaccttcttcttccacc |
46512147 |
T |
|
| Q |
294 |
tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattgagcatgagtatttaggtgcctgcactgttatattctat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46512146 |
tgagtatgttcatatgattcgctcccatcgacacatatttgaggcacaagcatcacaaattgagcatgagtgtttaggtgcctgcactgttatattctat |
46512047 |
T |
|
| Q |
394 |
gtagcaagtttgaaagattaaaatatataccgcattactgtactttttcaagttcagtg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46512046 |
gtagcaagtttgaaagattaaaatatataccgcattactgtactttttcaagttcagtg |
46511988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 46517092 - 46516904
Alignment:
| Q |
1 |
aagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46517092 |
aagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgcca |
46516993 |
T |
|
| Q |
101 |
ccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttcagtta |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46516992 |
ccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcccacttcagtta |
46516904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 195 - 355
Target Start/End: Original strand, 46165564 - 46165724
Alignment:
| Q |
195 |
aggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacct |
294 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46165564 |
aggatgcacagcgtgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacct |
46165663 |
T |
|
| Q |
295 |
gagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
46165664 |
gagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcacaaattg |
46165724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 46524799 - 46524611
Alignment:
| Q |
1 |
aagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgcca |
100 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||| ||||||||||| | || |||||||||||||| || || ||| ||||||| ||||||||||| |
|
|
| T |
46524799 |
aagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgcca |
46524700 |
T |
|
| Q |
101 |
ccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttcagtta |
189 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| | || ||||| |||||||||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
46524699 |
ccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagtta |
46524611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 46322760 - 46322937
Alignment:
| Q |
1 |
aagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgcca |
100 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||| ||||||||||| | || ||||||||||| || ||||||||| |||||||||| |||||||| |
|
|
| T |
46322760 |
aagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtactcttggcgcca |
46322859 |
T |
|
| Q |
101 |
ccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc |
178 |
Q |
| |
|
|||||||| |||||| |||| || ||||||||| |||| ||||| ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
46322860 |
ccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctcc |
46322937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 46479303 - 46479119
Alignment:
| Q |
1 |
aagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgcca |
100 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| ||||||| ||||||||||| |
|
|
| T |
46479303 |
aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca |
46479204 |
T |
|
| Q |
101 |
ccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttca |
185 |
Q |
| |
|
|||||||| |||||| ||||||| || ||||| | || ||||||||||| ||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
46479203 |
ccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttca |
46479119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 46520733 - 46520549
Alignment:
| Q |
1 |
aagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgcca |
100 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| ||||||| ||||||||||| |
|
|
| T |
46520733 |
aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca |
46520634 |
T |
|
| Q |
101 |
ccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttca |
185 |
Q |
| |
|
|||||||| |||||| ||||||| || ||||| | || ||||||||||| ||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
46520633 |
ccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttca |
46520549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 46532350 - 46532175
Alignment:
| Q |
3 |
gtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgccacc |
102 |
Q |
| |
|
||||||||||||||||||||| | || || ||||||||||||||||| | || |||||||||||||| || || ||| ||||||| ||||||||||||| |
|
|
| T |
46532350 |
gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc |
46532251 |
T |
|
| Q |
103 |
agattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc |
178 |
Q |
| |
|
| ||||| ||||| ||||||| || |||||| |||| ||||||||||| |||||||| |||||||| || ||||| |
|
|
| T |
46532250 |
aaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctcc |
46532175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 46326465 - 46326638
Alignment:
| Q |
1 |
aagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgcca |
100 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||| ||||||||||| | || ||||||||||| || ||||||||| |||||||||| |||||||| |
|
|
| T |
46326465 |
aagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtactcttggcgcca |
46326564 |
T |
|
| Q |
101 |
ccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatg |
174 |
Q |
| |
|
|||||||| |||||| | ||||| || ||||| | || ||||| |||||||||||||| |||||||| |||| |
|
|
| T |
46326565 |
ccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacacagatg |
46326638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 206 - 355
Target Start/End: Complemental strand, 5959956 - 5959810
Alignment:
| Q |
206 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca |
305 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
5959956 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccacgaacttca---acctgagcatgttca |
5959860 |
T |
|
| Q |
306 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
355 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
5959859 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
5959810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 208 - 354
Target Start/End: Complemental strand, 28214902 - 28214756
Alignment:
| Q |
208 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
307 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||| || | ||||||||||| | |
|
|
| T |
28214902 |
cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca |
28214803 |
T |
|
| Q |
308 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt |
354 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | |||||||||||||||| |
|
|
| T |
28214802 |
tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt |
28214756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 46490505 - 46490328
Alignment:
| Q |
1 |
aagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgcca |
100 |
Q |
| |
|
|||||||||| |||||||||||| | || |||||||| ||||||||||| | || ||||||||||||| || |||||| ||||||| ||||||||||| |
|
|
| T |
46490505 |
aagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggtattcatggcgcca |
46490406 |
T |
|
| Q |
101 |
ccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc |
178 |
Q |
| |
|
||||||| |||||| ||||||| || |||||| | || ||||||||||||||||| || || ||||| |||||||| |
|
|
| T |
46490405 |
ccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctcc |
46490328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 355
Target Start/End: Original strand, 4127828 - 4127971
Alignment:
| Q |
209 |
gtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcatat |
308 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
4127828 |
gtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacctgagcatgttcatat |
4127924 |
T |
|
| Q |
309 |
gattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
355 |
Q |
| |
|
||||| ||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
4127925 |
gattcactctcatcgacgcatatctgatacacaagcatcacaaattg |
4127971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 46494803 - 46494630
Alignment:
| Q |
1 |
aagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgcca |
100 |
Q |
| |
|
||||||||||||||||||||||| | || || ||||||||||||||||| | || |||||||||| || || |||||| |||||||||| |||||||| |
|
|
| T |
46494803 |
aagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactctggtactcttggcgcca |
46494704 |
T |
|
| Q |
101 |
ccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatg |
174 |
Q |
| |
|
|||||||| |||||| |||| || || ||||| | |||||||| ||||| ||||| || || || ||||||| |
|
|
| T |
46494703 |
ccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactgatg |
46494630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 194 - 355
Target Start/End: Original strand, 19870612 - 19870773
Alignment:
| Q |
194 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc |
293 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19870612 |
caggatgcacaacacgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacc |
19870711 |
T |
|
| Q |
294 |
tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
19870712 |
tgagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcaaaaattg |
19870773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 194 - 355
Target Start/End: Original strand, 48987147 - 48987308
Alignment:
| Q |
194 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc |
293 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
48987147 |
caggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaatctcaacataaccaccttctggttccacc |
48987246 |
T |
|
| Q |
294 |
tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
48987247 |
tgagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcacaaattg |
48987308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 241 - 355
Target Start/End: Original strand, 25488280 - 25488394
Alignment:
| Q |
241 |
aaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcatatgattcgctcccatcgacacatatctgatgaac |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
25488280 |
aaatataaggttgttgactttgaagctcaacataaccaccttctggttccacctgagtatgttcatatgattcgctcccatcgacacatatctgaggcac |
25488379 |
T |
|
| Q |
341 |
aagcatcacaaattg |
355 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25488380 |
aagcatcacaaattg |
25488394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 208 - 354
Target Start/End: Complemental strand, 8146296 - 8146150
Alignment:
| Q |
208 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
307 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||| || | ||||||||||| | |
|
|
| T |
8146296 |
cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca |
8146197 |
T |
|
| Q |
308 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt |
354 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | |||||||||||||||| |
|
|
| T |
8146196 |
tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt |
8146150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 25487826 - 25487778
Alignment:
| Q |
194 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaa |
242 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25487826 |
caggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaa |
25487778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 206 - 355
Target Start/End: Complemental strand, 14297 - 14151
Alignment:
| Q |
206 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca |
305 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
14297 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccacgaacttca---acctgagcatgttca |
14201 |
T |
|
| Q |
306 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
355 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
14200 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
14151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 206 - 355
Target Start/End: Original strand, 6827665 - 6827811
Alignment:
| Q |
206 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca |
305 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
6827665 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagcttaacataaccac---gaacttcaacctgagcatgttca |
6827761 |
T |
|
| Q |
306 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
355 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6827762 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
6827811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 208 - 354
Target Start/End: Original strand, 5632 - 5778
Alignment:
| Q |
208 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
307 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||| || | ||||||||||| | |
|
|
| T |
5632 |
cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca |
5731 |
T |
|
| Q |
308 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt |
354 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | |||||||||||||||| |
|
|
| T |
5732 |
tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt |
5778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 206 - 355
Target Start/End: Original strand, 17939646 - 17939792
Alignment:
| Q |
206 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca |
305 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
17939646 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacctgagcatgttca |
17939742 |
T |
|
| Q |
306 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
355 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
17939743 |
tatgattcactctcatcgacgcatatctgatacacaagcatcacaaattg |
17939792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 206 - 355
Target Start/End: Original strand, 36383408 - 36383554
Alignment:
| Q |
206 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca |
305 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| |||| ||||||||||| |||| || |||| ||||||| |
|
|
| T |
36383408 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacatgagcatgttca |
36383504 |
T |
|
| Q |
306 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
355 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
36383505 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
36383554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 335
Target Start/End: Complemental strand, 49573035 - 49572908
Alignment:
| Q |
208 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
307 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| |||||| ||||||||| ||| |||||| ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
49573035 |
cgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactttgtagcgggacataatcaccttcttctgccagctgagtatgtttata |
49572936 |
T |
|
| Q |
308 |
tgattcgctcccatcgacacatatctga |
335 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |
|
|
| T |
49572935 |
tgattcgctctcattgacacatatctga |
49572908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 335
Target Start/End: Original strand, 3904846 - 3904973
Alignment:
| Q |
208 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| || || || |||||||||||||||| |||||||||||| || |||||| || || | |||| |||||| |
|
|
| T |
3904846 |
cgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtagctcaacataatcatcttcttgaaccgccagggtattttcata |
3904945 |
T |
|
| Q |
308 |
tgattcgctcccatcgacacatatctga |
335 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
3904946 |
ctcctcgctcccatcgacaaatatctga |
3904973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 7475308 - 7475396
Alignment:
| Q |
90 |
tcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc |
178 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||| ||||||| | |||||||||||||| |||||||| ||| |||| |
|
|
| T |
7475308 |
tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctcc |
7475396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 208 - 355
Target Start/End: Complemental strand, 5358515 - 5358368
Alignment:
| Q |
208 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
307 |
Q |
| |
|
||||||||||||||||||| ||| ||||| || ||||| |||||| |||||| || ||| |||||| ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
5358515 |
cgtatggttatttcacttgttcggaagattggaaaatacaaggttattgactctgtagcgagacataatcaccttcttctgccagctgagtatgtttata |
5358416 |
T |
|
| Q |
308 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
355 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
5358415 |
tgatttgctctcatcgacacatatctgagtcacaagcatcccaaattg |
5358368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 335
Target Start/End: Original strand, 11701 - 11828
Alignment:
| Q |
208 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| || || || |||||||||||||||| |||||||||||| || |||||| || || | |||| |||||| |
|
|
| T |
11701 |
cgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtagctcaacataatcatcttcttgaaccgccagggtattttcata |
11800 |
T |
|
| Q |
308 |
tgattcgctcccatcgacacatatctga |
335 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
11801 |
ctcctcgctcccatcgacaaatatctga |
11828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 29760549 - 29760623
Alignment:
| Q |
206 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccacc |
280 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||| |||||||||||| |
|
|
| T |
29760549 |
cgcgtatggttatttcacttgatcagaagatagagaaatataaagttgttgactttatagctgaacataaccacc |
29760623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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