View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3852_high_9 (Length: 467)
Name: NF3852_high_9
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_high_9 |
 | |
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| [»] scaffold0716 (2 HSPs) |
| | |
|
| [»] scaffold0010 (2 HSPs) |
| | |
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| [»] scaffold0894 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 239 - 457
Target Start/End: Complemental strand, 7314269 - 7314051
Alignment:
| Q |
239 |
tagtatctgtttatgctgcttctgcataccacacggtttctatatatataaattaaaaataagacttctggtaatatataactaaaggtaatggtagttt |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
7314269 |
tagtatctatttatgctgcttctgcataccacacggtttctatatatataaattaaaaataagacttctggtgatatataacaaaaggtaatggtagttt |
7314170 |
T |
|
| Q |
339 |
ttgatatagtttccaagcacttttcccatgaacatattttttgtagtcgtatttgatggcagaattgttttgtcctattgtaagttccattatcaaatat |
438 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
7314169 |
ttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtatttgatggcataattgttttatcctgttgtaagttccattatcaaatat |
7314070 |
T |
|
| Q |
439 |
tgacctatatgtgcctttg |
457 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7314069 |
tgacctatatgtgcctttg |
7314051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 7314461 - 7314288
Alignment:
| Q |
1 |
cagcctgtgagttatcaatccatctcgccgatgagttgctgtttcttcctcctttgaaagttccacatcgtaagactactgttgtacaatcggtaagtcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7314461 |
cagcctgtgagttatcaatccatctcgccgatgggttgctgtttcttcctcctttcaaaattccacatcgtaagactactgttgtaccatcggtaagtcc |
7314362 |
T |
|
| Q |
101 |
gatttgtgttgttgtttgttatgctgaaaccacaacgctcaaagagagcttccatcaaagcaggtcccaggttata |
176 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||| | ||| ||||| |||||||||| |||||||||||| |
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|
| T |
7314361 |
ca-ttgtgttgttgtttgttctgctgaaaccacaacgcttagaga-agcttggatcaaagcagatcccaggttata |
7314288 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 239 - 457
Target Start/End: Complemental strand, 11136788 - 11136570
Alignment:
| Q |
239 |
tagtatctgtttatgctgcttctgcataccacacggtttctatatatataaattaaaaataagacttctggtaatatataactaaaggtaatggtagttt |
338 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
11136788 |
tagtatctatttatgctgcttctgcataccacacgatttctatatatataaattaaaaataagacttctggtgatatataacaaaaggtaatggtagttt |
11136689 |
T |
|
| Q |
339 |
ttgatatagtttccaagcacttttcccatgaacatattttttgtagtcgtatttgatggcagaattgttttgtcctattgtaagttccattatcaaatat |
438 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||||| ||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
11136688 |
ttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtgtttgatggcgtaattgttttatcctgttgtaagttccattatcaaatat |
11136589 |
T |
|
| Q |
439 |
tgacctatatgtgcctttg |
457 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11136588 |
tgacctatatgtgcctttg |
11136570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 11137014 - 11136843
Alignment:
| Q |
4 |
cctgtgagttatcaatccatctcgccgatgagttgctgttt-cttcctcctttgaaagttccacatcgtaagactactgttgtacaatcggtaagtccga |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11137014 |
cctgtgagttatcaatccatctcgccgatgagttgctgttttcttcctcctttcaaaattccacatcgtaagactactgttgtacaatcggtaagtccga |
11136915 |
T |
|
| Q |
103 |
tttgtgttgttgtttgttatgctgaaaccacaacgctcaaagagagcttccatcaaagcaggtcccaggttata |
176 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| | ||||||||| |
|
|
| T |
11136914 |
-ttgtgttgttgtttgttctgctgaaaccacaacgctcaaaga-agcttcgatcaaagcagtacacaggttata |
11136843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 8650395 - 8650563
Alignment:
| Q |
1 |
cagcctgtgagttatcaatccatctcgccgatgagttgctgttt-cttcctcctttgaaagttccacatcgtaagactactgttgtacaatcggtaagtc |
99 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8650395 |
cagcttgtgagttatcaatccatctcgccgatgagttgctgttttcttcctcctttcaaaattccacatcgtaagactattgttgtacaatcggtaagtc |
8650494 |
T |
|
| Q |
100 |
cgatttgtgttgttgtttgttatgctgaaaccacaacgctcaaagagagcttccatcaaagcaggtcccag |
170 |
Q |
| |
|
||| ||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
8650495 |
cga-ttgtgttgttgtttgttctcctgaaaccacaacgctcaaaga-agcttcgatcaaagcaggtcccag |
8650563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 430
Target Start/End: Original strand, 11232982 - 11233029
Alignment:
| Q |
383 |
agtcgtatttgatggcagaattgttttgtcctattgtaagttccatta |
430 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||| |||||||| |
|
|
| T |
11232982 |
agtcgtatttgatagctgaattgttttgtccttttgtaaattccatta |
11233029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0716 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 97 - 299
Target Start/End: Original strand, 2429 - 2633
Alignment:
| Q |
97 |
gtccgatttgtgttgttgtttgttatgctgaaaccacaacgctcaaagagagcttccatcaaagcaggtcccaggttatannnnnnnattactcgcgata |
196 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||| |||||||| |||||| ||||||| ||||| |
|
|
| T |
2429 |
gtccgatttgtgttgttgtttgttctgctgaaaccacaacgctcaaagaaagtttcgatcaaagtaggtcccatgttatatttttttattactctcgata |
2528 |
T |
|
| Q |
197 |
tcaaatatatggttg-ttctttttataaagatggtaacgatat-tagtatctgtttatgctgcttctgcataccacacggtttctatatatataaattaa |
294 |
Q |
| |
|
|||| |||||||||| || |||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2529 |
tcaagtatatggttgtttttttttacaaagatggggacgatatctagtatctatttatgctgcttctgcataccacacggtttctatatatatcaattaa |
2628 |
T |
|
| Q |
295 |
aaata |
299 |
Q |
| |
|
||||| |
|
|
| T |
2629 |
aaata |
2633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0716; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 410 - 457
Target Start/End: Original strand, 7245 - 7292
Alignment:
| Q |
410 |
gtcctattgtaagttccattatcaaatattgacctatatgtgcctttg |
457 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7245 |
gtcctgttgtaagttccattatcaaatattgacctatatgtgcctttg |
7292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 360 - 457
Target Start/End: Original strand, 245939 - 246036
Alignment:
| Q |
360 |
tttcccatgaacatattttttgtagtcgtatttgatggcagaattgttttgtcctattgtaagttccattatcaaatattgacctatatgtgcctttg |
457 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
245939 |
tttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgcatttg |
246036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 213
Target Start/End: Original strand, 245585 - 245742
Alignment:
| Q |
58 |
aagttccacatcgtaagactactgttgtacaatcggtaagtccgatttgtgttgttgtttgttatgctgaaaccacaac----gctcaaagaga-gcttc |
152 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| | |||| |||||| |||||| ||||| ||| |||||| |||| ||||||| | | ||||| |
|
|
| T |
245585 |
aagtttcacatcgtaagactc---ttgtacaatcgtttggtcctatttgttttgttgcttgttctgcggaaaccgcaacaaaagctcaaacaaaagcttc |
245681 |
T |
|
| Q |
153 |
catcaaagcaggtcccaggttatannnnnnnattactcgcgatatcaaatatatggttgtt |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
245682 |
gatcaaagcaggtcccaggttatatctttttattactcgcgatatcaagtatatggttgtt |
245742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 360 - 457
Target Start/End: Complemental strand, 37282259 - 37282162
Alignment:
| Q |
360 |
tttcccatgaacatattttttgtagtcgtatttgatggcagaattgttttgtcctattgtaagttccattatcaaatattgacctatatgtgcctttg |
457 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37282259 |
tttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcccgttgtaagttccattatcaaatattgacctatatgtgcatttg |
37282162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 213
Target Start/End: Complemental strand, 37282615 - 37282458
Alignment:
| Q |
58 |
aagttccacatcgtaagactactgttgtacaatcggtaagtccgatttgtgttgttgtttgttatgctgaaaccacaac----gctcaaagaga-gcttc |
152 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| | |||| |||||| |||||| ||||| ||| |||||| |||| ||||||| | | ||||| |
|
|
| T |
37282615 |
aagtttcacatcgtaagactc---ttgtacaatcgtttggtcctatttgttttgttgcttgttctgcggaaaccgcaacaaaagctcaaacaaaagcttc |
37282519 |
T |
|
| Q |
153 |
catcaaagcaggtcccaggttatannnnnnnattactcgcgatatcaaatatatggttgtt |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
37282518 |
gatcaaagcaggtcccaggttatatctttttattactcgcgatatcaagtatatggttgtt |
37282458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 58 - 238
Target Start/End: Original strand, 40933607 - 40933790
Alignment:
| Q |
58 |
aagttccacatcgtaagactactgttgtacaatcggtaagtccgatttgtgttgttgtttgttatgctgaaaccacaac----gctcaaagaga-gcttc |
152 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| | ||||||||||| |||||| ||||| |||||||||| |||| ||||||| | | ||||| |
|
|
| T |
40933607 |
aagtttcacatcgtaagactc---ttgtacaatcgtttggtccgatttgttttgttgcttgttctgctgaaaccgcaacaaaagctcaaacaaaagcttc |
40933703 |
T |
|
| Q |
153 |
catcaaagcaggtcccaggttatannnnnnnattactcgcgatatcaaatatatggttgttctt-tttataaagatggtaacgatat |
238 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| || |||| |||||||| ||||||| |
|
|
| T |
40933704 |
gatcaaagcaggtcccaggttatatctttttattactcgcgatatcaagtatatggttgtttttatttacaaagatggctacgatat |
40933790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 430
Target Start/End: Original strand, 40933985 - 40934032
Alignment:
| Q |
383 |
agtcgtatttgatggcagaattgttttgtcctattgtaagttccatta |
430 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||| |||||||| |
|
|
| T |
40933985 |
agtcgtatttgatagctgaattgttttgtccttttgtaaattccatta |
40934032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0894 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0894
Description:
Target: scaffold0894; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 457
Target Start/End: Original strand, 1 - 47
Alignment:
| Q |
411 |
tcctattgtaagttccattatcaaatattgacctatatgtgcctttg |
457 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
tcctgttgtaagttccattatcaaatattgacctatatgtgcctttg |
47 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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