View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3852_low_11 (Length: 457)

Name: NF3852_low_11
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3852_low_11
NF3852_low_11
[»] chr4 (20 HSPs)
chr4 (1-301)||(5838164-5838462)
chr4 (374-442)||(5838023-5838091)
chr4 (372-440)||(8085086-8085154)
chr4 (372-440)||(28511586-28511654)
chr4 (372-440)||(1359349-1359417)
chr4 (372-440)||(19512391-19512459)
chr4 (372-440)||(22451013-22451081)
chr4 (372-440)||(44233083-44233151)
chr4 (374-440)||(56205374-56205440)
chr4 (372-440)||(41548640-41548709)
chr4 (379-440)||(52323692-52323753)
chr4 (372-440)||(22457569-22457637)
chr4 (372-440)||(31991106-31991174)
chr4 (377-440)||(7880702-7880765)
chr4 (372-440)||(50947892-50947959)
chr4 (374-440)||(40632178-40632244)
chr4 (373-438)||(45288913-45288978)
chr4 (372-440)||(7312456-7312524)
chr4 (372-440)||(9392079-9392147)
chr4 (372-440)||(38023728-38023796)
[»] chr3 (17 HSPs)
chr3 (372-440)||(48868998-48869066)
chr3 (372-440)||(13278997-13279065)
chr3 (372-440)||(29451657-29451725)
chr3 (375-440)||(7050316-7050381)
chr3 (372-440)||(4604143-4604211)
chr3 (372-440)||(31165171-31165239)
chr3 (374-440)||(41286576-41286642)
chr3 (372-437)||(8410577-8410642)
chr3 (380-440)||(16867146-16867206)
chr3 (372-440)||(41718092-41718160)
chr3 (374-440)||(52786298-52786363)
chr3 (374-440)||(52792562-52792627)
chr3 (372-440)||(13279504-13279572)
chr3 (384-440)||(53253664-53253720)
chr3 (374-420)||(5630494-5630540)
chr3 (372-438)||(33149288-33149354)
chr3 (372-440)||(19010435-19010504)
[»] chr7 (13 HSPs)
chr7 (372-440)||(20539725-20539793)
chr7 (372-438)||(37571965-37572031)
chr7 (372-440)||(2130207-2130275)
chr7 (372-440)||(12087899-12087967)
chr7 (372-440)||(26923522-26923590)
chr7 (372-439)||(18946490-18946557)
chr7 (372-440)||(27747702-27747770)
chr7 (374-440)||(26642732-26642799)
chr7 (377-440)||(34379342-34379405)
chr7 (374-440)||(27085901-27085967)
chr7 (374-440)||(27192334-27192400)
chr7 (374-439)||(20948772-20948837)
chr7 (372-436)||(11561833-11561897)
[»] chr1 (11 HSPs)
chr1 (372-440)||(48187407-48187475)
chr1 (376-440)||(44773821-44773885)
chr1 (372-440)||(44699855-44699924)
chr1 (372-440)||(13425745-13425813)
chr1 (372-440)||(14754833-14754901)
chr1 (372-440)||(27273313-27273381)
chr1 (372-440)||(46202310-46202379)
chr1 (372-440)||(7877541-7877609)
chr1 (372-440)||(49534602-49534670)
chr1 (380-440)||(20362369-20362429)
chr1 (380-440)||(20548482-20548542)
[»] chr8 (10 HSPs)
chr8 (374-440)||(23675951-23676017)
chr8 (372-440)||(30591855-30591924)
chr8 (372-440)||(26851528-26851596)
chr8 (372-440)||(4857395-4857463)
chr8 (374-438)||(28722753-28722817)
chr8 (374-438)||(28730395-28730459)
chr8 (372-440)||(40674073-40674140)
chr8 (373-440)||(42578306-42578373)
chr8 (372-440)||(34324174-34324242)
chr8 (373-440)||(39154478-39154546)
[»] chr2 (10 HSPs)
chr2 (372-438)||(32062181-32062247)
chr2 (372-440)||(30725833-30725901)
chr2 (372-440)||(36555982-36556050)
chr2 (373-440)||(11914041-11914109)
chr2 (372-440)||(37916678-37916746)
chr2 (376-440)||(19383228-19383291)
chr2 (372-440)||(20285733-20285801)
chr2 (372-440)||(20291017-20291085)
chr2 (372-440)||(31368939-31369007)
chr2 (372-440)||(22334042-22334110)
[»] chr6 (9 HSPs)
chr6 (372-440)||(16802906-16802974)
chr6 (372-440)||(23303715-23303783)
chr6 (372-440)||(5401249-5401317)
chr6 (372-440)||(25361248-25361316)
chr6 (372-440)||(28301947-28302015)
chr6 (372-440)||(28510058-28510126)
chr6 (377-440)||(30801585-30801648)
chr6 (372-440)||(26629708-26629776)
chr6 (372-440)||(26735684-26735752)
[»] chr5 (9 HSPs)
chr5 (372-440)||(18932464-18932532)
chr5 (372-440)||(6616854-6616922)
chr5 (372-437)||(37500651-37500716)
chr5 (372-440)||(6618001-6618069)
chr5 (372-440)||(6620345-6620413)
chr5 (372-440)||(6921961-6922029)
chr5 (372-440)||(24075284-24075352)
chr5 (373-440)||(29691965-29692033)
chr5 (372-440)||(42380858-42380926)
[»] scaffold0087 (1 HSPs)
scaffold0087 (372-440)||(9807-9875)
[»] scaffold0061 (1 HSPs)
scaffold0061 (372-440)||(46648-46716)
[»] scaffold0048 (2 HSPs)
scaffold0048 (372-440)||(44493-44561)
scaffold0048 (372-440)||(72500-72566)
[»] scaffold0017 (1 HSPs)
scaffold0017 (372-440)||(152071-152139)
[»] scaffold0084 (1 HSPs)
scaffold0084 (373-437)||(4318-4383)
[»] scaffold0136 (1 HSPs)
scaffold0136 (372-440)||(13702-13770)
[»] scaffold0131 (1 HSPs)
scaffold0131 (372-440)||(4819-4887)
[»] scaffold0063 (1 HSPs)
scaffold0063 (372-440)||(3934-4002)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 5838462 - 5838164
Alignment:
Q  1 tatttttatttgaacaagttagtgtatttagtaattacctgttctataatttaattttttactattataaatgagnnnnnnngtcaaaaataagtagaaa 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||       ||||||||||||||||||    
T  5838462 tatttttatttgaacaagttagtatatttagtaattacctgttcgataatttatttttttactattataaatgagtttatttgtcaaaaataagtagaaa 5838363  T
Q  101 gaaaaatgttaaaatatatttatttgttttatagctgtaattcgacttattttgacannnnnnnnnnatctctttagcaacaacaaaaagagccttattt 200  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||          ||||||| |||||||||||||||||||||||||    
T  5838362 gaaaaatgttaaaatatatttatttgttttatag-------tcgacttattttgaca-tttttttttatctcttaagcaacaacaaaaagagccttattt 5838271  T
Q  201 cctt----nnnnnnnnnnnnngctttgttaacgataaaatgcatatatattttcttatttagccttttcta--caaatagttaactttggctttgtttgc 294  Q
    ||||                 ||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||||    
T  5838270 ccttaaaaaaaaaaaaaaaaagctttgttaacgataaaatgcatatatatttttatatttagccttttctacgcaaatagttaactttggctttgtttgc 5838171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 374 - 442
Target Start/End: Complemental strand, 5838091 - 5838023
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttaccc 442  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||    
T  5838091 ttccacttgtttgggagttagaaaactaacaaggaaaggagagggagagtttatgttataattttaccc 5838023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 8085086 - 8085154
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||    
T  8085086 ccttccccttgtttgggagttaaaaaaccaacaaggaaaggagatggagggcttatgttataattttac 8085154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 28511586 - 28511654
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || ||||||||||||||||| |||||||||||||||||||    
T  28511586 ccttccccttgtttgggagttaaaaagccaataaggaaagaagatggagggcttatgttataattttac 28511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 1359417 - 1359349
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||| ||||| ||||| || ||| |||| |||||||| |||||||||||||||||||    
T  1359417 ccttccccttgtttggaagttaaaaaaccaataagaaaaggagatggagggcttatgttataattttac 1359349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 19512459 - 19512391
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||||||||||||  ||||||||||||||||||    
T  19512459 ccttccccttgtttgggagttaaaaagccaataaggtaagaagatggaggacttatgttataattttac 19512391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 22451013 - 22451081
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||| ||||||||||| ||||| || ||| |||| |||||||| |||||||||||||||||||    
T  22451013 ccttccccttatttgggagttaaaaaaccaataagaaaaggagatggagggcttatgttataattttac 22451081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 44233083 - 44233151
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||| |||||||||||||| ||||| || |||| ||| |||||||| |||||||||||||||||||    
T  44233083 ccttccctttgtttgggagttaaaaaaccaataaggcaaggagatggagggcttatgttataattttac 44233151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 56205374 - 56205440
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||| ||| | || |||||||| |||||||| | |||||||||||||||||    
T  56205374 ttccccttgtttgggagttaaaaagccaataaggaaaggagatggagggtttatgttataattttac 56205440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 41548709 - 41548640
Alignment:
Q  372 ccttccccttgtttgggagttaga-aaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| | |||| ||||| ||||| |||||||| |||||||| ||||||||||    
T  41548709 ccttccccttgtttgggagttaaagaaaccaacaaagaaaggagatggagggcttatgtgataattttac 41548640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 52323692 - 52323753
Alignment:
Q  379 cttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||| ||||| ||||||||||| |||||||   ||||||||||||||||||    
T  52323692 cttgtttgggagttaaaaaaccaacaaggaaagtagatggaagacttatgttataattttac 52323753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 22457569 - 22457637
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||||||| |||| |||  ||||||||||||||||||    
T  22457569 ccttccccttgtttgggagttaaaaagccaataaggaaaggagattgaggacttatgttataattttac 22457637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 31991174 - 31991106
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||| ||||| ||| | || |||||||| ||||||||  ||||||||||||||||||    
T  31991174 ccttccccttgtttggaagttaaaaagccaataaggaaaggagatggaggacttatgttataattttac 31991106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 7880702 - 7880765
Alignment:
Q  377 cccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||||| ||| | || |||||||| |||||||| | |||||||||||||||||    
T  7880702 cccttgtttgggagttaaaaagccaataaggaaaggagatggagggtttatgttataattttac 7880765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 50947959 - 50947892
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | |  |||||||  |||||||| |||||||||||||||||||    
T  50947959 ccttccccttgtttgggagtta-aaagccagtaaggaaatgagatggagggcttatgttataattttac 50947892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 40632244 - 40632178
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||| ||| | || |||| ||| |||||||   ||||||||||||||||||    
T  40632244 ttccccttgtttgggagttaaaaagccaataaggtaaggagatggatgacttatgttataattttac 40632178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 45288978 - 45288913
Alignment:
Q  373 cttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataatttt 438  Q
    ||||||||||||||||||||| || || ||||||||||  ||||| |   ||||||||||||||||    
T  45288978 cttccccttgtttgggagttaaaacaccaacaaggaaatgagatgaatgacttatgttataatttt 45288913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 7312456 - 7312524
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||| |||||||| ||||||| ||| | || |||| ||| ||||||||  ||||||||||||||||||    
T  7312456 ccttctccttgttttggagttaaaaagccaataaggtaaggagatggaggacttatgttataattttac 7312524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 9392147 - 9392079
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||| |||||||||||||| || ||| | || |||| ||| |||||||| |||||||||||| ||||||    
T  9392147 cctttcccttgtttgggagctaaaaagccaataaggtaaggagatggagggcttatgttatagttttac 9392079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 38023796 - 38023728
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| |||| ||   ||||||||||||||||||    
T  38023796 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatagatgacttatgttataattttac 38023728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 48868998 - 48869066
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||||    
T  48868998 ccttccccttgtttgggagttaaaaagccaataaggaaagaagatggagagcttatgttataattttac 48869066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 13279065 - 13278997
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | ||||||||||| ||||| || |||||||||||||||||||    
T  13279065 ccttccccttgtttgggagttaaaaagccaacaaggaaaggagatgaagggcttatgttataattttac 13278997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 29451657 - 29451725
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| ||||||||||||||||||||||||||||    
T  29451657 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatggagagcttatgttataattttac 29451725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 7050381 - 7050316
Alignment:
Q  375 tccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||||||| ||| | || |||||||| |||||||| |||||||||||||||||||    
T  7050381 tccccttgtttgggagttaaaaagccaataaggaaaggagatggagggcttatgttataattttac 7050316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 4604143 - 4604211
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| |||||||| |||||||||||||||||||    
T  4604143 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatggagggcttatgttataattttac 4604211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 31165171 - 31165239
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| |||||||||||| | |||||||||||||||||    
T  31165171 ccttccccttgtttgggagttaaaaagccaataaggtaagaagatggagggtttatgttataattttac 31165239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 41286642 - 41286576
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||| ||||||  ||||| ||||||||||| ||||| || |||||||||||||||||||    
T  41286642 ttccccttgtttaggagttcaaaaaccaacaaggaaaggagatgaagggcttatgttataattttac 41286576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 8410642 - 8410577
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattt 437  Q
    ||||||||||||||||||||||  | || ||||||||||| ||||| || ||||||||||||||||    
T  8410642 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatgaagggcttatgttataattt 8410577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 16867206 - 16867146
Alignment:
Q  380 ttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||| || || ||||||||||||||||| ||  ||||||||||||||||||    
T  16867206 ttgtttgggagttaaaacaccaacaaggaaagaagatgaaggacttatgttataattttac 16867146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 41718092 - 41718160
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||| ||||| ||| | || |||| ||| |||||||| |||||||||||||||||||    
T  41718092 ccttccccttgtttggaagttaaaaagccaataaggtaaggagatggagggcttatgttataattttac 41718160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 52786298 - 52786363
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||| ||| | ||||||| |||||||||| | | |||||||||||||||||    
T  52786298 ttccccttgtttgggagttaaaaagccaacaaggtaagaagatgg-gggtttatgttataattttac 52786363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 52792562 - 52792627
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||| ||| | ||||||| |||||||||| | | |||||||||||||||||    
T  52792562 ttccccttgtttgggagttaaaaagccaacaaggtaagaagatgg-gggtttatgttataattttac 52792627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 13279504 - 13279572
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||||| |||| ||| | || |||||||| | || ||| |||||||||||||||||||    
T  13279504 ccttccccttgtttgggggttaaaaagccaataaggaaaggaaattgagggcttatgttataattttac 13279572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 53253720 - 53253664
Alignment:
Q  384 ttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||| ||||| ||||||||||| |||||||   ||||||||||||||||||    
T  53253720 ttgggagttaaaaaaccaacaaggaaaggagatggatgacttatgttataattttac 53253664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 5630540 - 5630494
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggag 420  Q
    |||||||||||||||||||| ||| | || |||||||||||||||||    
T  5630540 ttccccttgtttgggagttaaaaagccaataaggaaagaagatggag 5630494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 33149288 - 33149354
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataatttt 438  Q
    |||||||||||||||||||||| || || || |||||||| ||||| |   ||||||||||||||||    
T  33149288 ccttccccttgtttgggagttaaaacaccaataaggaaaggagatgaatgacttatgttataatttt 33149354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 19010435 - 19010504
Alignment:
Q  372 ccttccccttgtttgggagttagaaaa-ctaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||| ||||||||| |||||| |||| | ||||||||||  |||||||  |||||||||||||||||||    
T  19010435 ccttcaccttgtttgcgagttaaaaaaaccaacaaggaaatgagatggaaggcttatgttataattttac 19010504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 20539793 - 20539725
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | ||||||||||| |||||||| |||||||||||||||||||    
T  20539793 ccttccccttgtttgggagttaaaaagccaacaaggaaaggagatggagggcttatgttataattttac 20539725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 37572031 - 37571965
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataatttt 438  Q
    |||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||||||    
T  37572031 ccttccccttgtttgggagttaaaacaccaacaaggaaagaagatgaagggcttatgttataatttt 37571965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 2130207 - 2130275
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | ||||||||||| ||||||||  ||||||||||||||||||    
T  2130207 ccttccccttgtttgggagttaaaaagccaacaaggaaaggagatggaggacttatgttataattttac 2130275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 12087967 - 12087899
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| ||||||||||||||||||||||||||||    
T  12087967 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatggagagcttatgttataattttac 12087899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 26923522 - 26923590
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| |||||||||||   ||||||||||||||||||    
T  26923522 ccttccccttgtttgggagttaaaaagccaataaggtaagaagatggaagacttatgttataattttac 26923590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 439
Target Start/End: Complemental strand, 18946557 - 18946490
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataatttta 439  Q
    |||||||||| ||||||||||| ||| | |  |||||||| |||||||| ||||||||||||||||||    
T  18946557 ccttccccttatttgggagttaaaaagccagtaaggaaaggagatggagggcttatgttataatttta 18946490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 27747702 - 27747770
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||| ||||||||||||||||| ||| | || |||| ||| |||||||| | |||||||||||||||||    
T  27747702 cctttcccttgtttgggagttaaaaagccaataaggtaaggagatggagggtttatgttataattttac 27747770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 26642799 - 26642732
Alignment:
Q  374 ttccccttgtttgggagttaga-aaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||| | |||| ||||||||||| |||||  ||| |||||| ||||||||||    
T  26642799 ttccccttgtttgggagttaaagaaaccaacaaggaaaggagatgaggagtttatgtgataattttac 26642732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 34379342 - 34379405
Alignment:
Q  377 cccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||||| ||| | || ||| |||| |||||| | |||||||||||||||||||    
T  34379342 cccttgtttgggagttaaaaatccaataagaaaaggagatggggggcttatgttataattttac 34379405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 27085901 - 27085967
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||| ||| | || |||||||  |||| ||  |||||||||||||||||||    
T  27085901 ttccccttgtttgggagttaaaaagccaataaggaaatgagatagaaggcttatgttataattttac 27085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 27192400 - 27192334
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||| ||| | || |||||||  |||| ||  |||||||||||||||||||    
T  27192400 ttccccttgtttgggagttaaaaagccaataaggaaatgagatagaaggcttatgttataattttac 27192334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 20948837 - 20948772
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataatttta 439  Q
    |||||||||||||||||||| || ||  |||||||||| ||||| |   |||||||||||||||||    
T  20948837 ttccccttgtttgggagttaaaacaccgacaaggaaaggagatgaatgacttatgttataatttta 20948772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 11561833 - 11561897
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataatt 436  Q
    |||||||||||||||||||||| ||| | |  ||| |||| ||||||||  ||||||||||||||    
T  11561833 ccttccccttgtttgggagttaaaaagccagtaagaaaaggagatggaggacttatgttataatt 11561897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 48187475 - 48187407
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | ||||||||||| |||||||| |||||||||||||||||||    
T  48187475 ccttccccttgtttgggagttaaaaagccaacaaggaaaggagatggagggcttatgttataattttac 48187407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 44773885 - 44773821
Alignment:
Q  376 ccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||    
T  44773885 ccccttgtttgggagttaaaaaaccaacaaggaaaggagatggagggcttatgtgataattttac 44773821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 44699855 - 44699924
Alignment:
Q  372 ccttccccttgtttgggagttaga-aaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| | |||| ||||||||||| |||||||| |||||||| ||||||||||    
T  44699855 ccttccccttgtttgggagttaaagaaaccaacaaggaaaggagatggagggcttatgtgataattttac 44699924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 13425813 - 13425745
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || ||| |||| ||||||||| ||||||||||||||||||    
T  13425813 ccttccccttgtttgggagttaaaaagccaataagaaaaggagatggagaacttatgttataattttac 13425745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 14754901 - 14754833
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| ||||||||  ||||||||||||||||||    
T  14754901 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatggaggacttatgttataattttac 14754833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 27273313 - 27273381
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || ||| |||| |||| ||| |||||||||||||||||||    
T  27273313 ccttccccttgtttgggagttaaaaagccaataagcaaaggagattgagggcttatgttataattttac 27273381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 46202310 - 46202379
Alignment:
Q  372 ccttccccttgtttgggagtt-agaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||||||||| | ||||| ||| || |||| |||||||| |||||||| ||||||||||    
T  46202310 ccttccccttgtttgggagttaaaaaaaccaacgagaaaaggagatggagggcttatgtgataattttac 46202379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 7877541 - 7877609
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||| ||||||||||| ||| | || || ||||| |||| ||| |||||||||||||||||||    
T  7877541 ccttccccttatttgggagttaaaaagccaataacgaaaggagattgagggcttatgttataattttac 7877609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 49534602 - 49534670
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| || || ||||||||||  ||||| |   ||||||||||||||||||    
T  49534602 ccttccccttgtttgggagttaaaacaccaacaaggaaatgagatgaatgacttatgttataattttac 49534670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 20362369 - 20362429
Alignment:
Q  380 ttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||| |||||| ||| | ||||||||||| | || ||| |||||||||||||||||||    
T  20362369 ttgtttgcgagttaaaaagccaacaaggaaaggaaattgagggcttatgttataattttac 20362429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 20548542 - 20548482
Alignment:
Q  380 ttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||| |||||| ||| | ||||||||||| | || ||| |||||||||||||||||||    
T  20548542 ttgtttgcgagttaaaaagccaacaaggaaaggaaattgagggcttatgttataattttac 20548482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 23676017 - 23675951
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||| ||| |||| |||||||| ||||||||| ||||||||||||||||||    
T  23676017 ttccccttgtttgggagttaaaaagctaataaggaaaggagatggagaacttatgttataattttac 23675951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 30591855 - 30591924
Alignment:
Q  372 ccttccccttgtttgggagttaga-aaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| | |||| ||||||||||| |||||||| |||||||| ||||||||||    
T  30591855 ccttccccttgtttgggagttaaagaaaccaacaaggaaaggagatggagggcttatgtgataattttac 30591924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 26851596 - 26851528
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| |||   || |||| ||| |||||||| |||||||||||||||||||    
T  26851596 ccttccccttgtttgggagttaaaaagtcaataaggtaaggagatggagggcttatgttataattttac 26851528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 4857395 - 4857463
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||| |||||||||||||| ||| | || |||| ||| |||||||| | |||||||||||||||||    
T  4857395 ccttccctttgtttgggagttaaaaagccaataaggtaaggagatggagggtttatgttataattttac 4857463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 28722817 - 28722753
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataatttt 438  Q
    |||||||||||||||||||| || || ||||||||||| ||||| |   ||||||||||||||||    
T  28722817 ttccccttgtttgggagttaaaacaccaacaaggaaaggagatgaatgacttatgttataatttt 28722753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 28730459 - 28730395
Alignment:
Q  374 ttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataatttt 438  Q
    |||||||||||||||||||| || || ||||||||||| ||||| |   ||||||||||||||||    
T  28730459 ttccccttgtttgggagttaaaacaccaacaaggaaaggagatgaatgacttatgttataatttt 28730395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 40674140 - 40674073
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||||| ||| ||||||| ||||| || |||| ||||| ||||||||    
T  40674140 ccttccccttgtttgggagttaaaaaaccaac-aggaaaggagatgaagggcttttgttaaaattttac 40674073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 42578373 - 42578306
Alignment:
Q  373 cttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||  |||||||||||||||  ||||| |   || |||||||||||||||    
T  42578373 cttccccttgtttgggagttaataaactaacaaggaaatgagatgaatgactcatgttataattttac 42578306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 34324242 - 34324174
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||| ||||||||||| || || ||| | || |||| ||| |||||||| |||||||||||||||||||    
T  34324242 cctttcccttgtttggaagctaaaaagccaataaggtaaggagatggagggcttatgttataattttac 34324174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 39154546 - 39154478
Alignment:
Q  373 cttccccttgtttgggagttagaaaa-ctaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||| |||||||| || |||| | ||||||||||| |||||||| | |||||| ||||||||||    
T  39154546 cttccccttatttgggagctaaaaaaaccaacaaggaaaggagatggagggtttatgtgataattttac 39154478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 32062247 - 32062181
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataatttt 438  Q
    |||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||||||    
T  32062247 ccttccccttgtttgggagttaaaacaccaacaaggaaagaagatgaagggcttatgttataatttt 32062181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 30725833 - 30725901
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || ||| ||||||||||||| |||||||||||||||||||    
T  30725833 ccttccccttgtttgggagttaaaaagccaataagaaaagaagatggagggcttatgttataattttac 30725901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 36556050 - 36555982
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| |||||||||||| |||||||||||||||||||    
T  36556050 ccttccccttgtttgggagttaaaaagccaataaggtaagaagatggagggcttatgttataattttac 36555982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 11914109 - 11914041
Alignment:
Q  373 cttccccttgtttgggagttaga-aaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||||||||| | |||| ||||||||||| |||||||| |||||||| ||||||||||    
T  11914109 cttccccttgtttgggagttaaagaaaccaacaaggaaaggagatggagtgcttatgtgataattttac 11914041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 37916678 - 37916746
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || || ||||| |||||||| |||||||||||||||||||    
T  37916678 ccttccccttgtttgggagttaaaaagccaataaagaaaggagatggagggcttatgttataattttac 37916746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 19383228 - 19383291
Alignment:
Q  376 ccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||| ||||| |||||| |||| |||||||| |||||||||| ||||||||    
T  19383228 ccccttgtttgggagttaaaaaaccaacaagaaaaggagatggagggcttatgtta-aattttac 19383291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 20285801 - 20285733
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||| |||||| ||| | || |||| ||| |||||||| |||||||||||||||||||    
T  20285801 ccttccccttgtttgagagttaaaaagccaataaggtaaggagatggagggcttatgttataattttac 20285733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 20291085 - 20291017
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||| |||||| ||| | || |||| ||| |||||||| |||||||||||||||||||    
T  20291085 ccttccccttgtttgagagttaaaaagccaataaggtaaggagatggagggcttatgttataattttac 20291017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 31369007 - 31368939
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || ||  |||| |||||||| |||||||||||||||||||    
T  31369007 ccttccccttgtttgggagttaaaaagccaataataaaaggagatggagggcttatgttataattttac 31368939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 22334042 - 22334110
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||| |||||||||||||||| ||| | || |||||||| |||||||   ||||||||||||||||||    
T  22334042 ccttctccttgtttgggagttaaaaagccaataaggaaagcagatggatgtcttatgttataattttac 22334110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 16802974 - 16802906
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || ||||||||||||||||| | |||||||||||||||||    
T  16802974 ccttccccttgtttgggagttaaaaagccaataaggaaagaagatggagggtttatgttataattttac 16802906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 23303715 - 23303783
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||| |||||| ||| | ||||||||||| |||||||| |||||||||||||||||||    
T  23303715 ccttccccttgtttgagagttaaaaagccaacaaggaaaggagatggagggcttatgttataattttac 23303783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 5401249 - 5401317
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | |  |||||||| |||||||| |||||||||||||||||||    
T  5401249 ccttccccttgtttgggagttaaaaagccagtaaggaaaggagatggagggcttatgttataattttac 5401317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 25361316 - 25361248
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| |||||||| |||||||||||||||||||    
T  25361316 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatggagggcttatgttataattttac 25361248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 28301947 - 28302015
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||||||| ||||||||  ||||||||||||||||||    
T  28301947 ccttccccttgtttgggagttaaaaagccaataaggaaaggagatggaggacttatgttataattttac 28302015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 28510126 - 28510058
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||||||| ||||||||  ||||||||||||||||||    
T  28510126 ccttccccttgtttgggagttaaaaagccaataaggaaaggagatggaggacttatgttataattttac 28510058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 30801648 - 30801585
Alignment:
Q  377 cccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||| |||||| ||||| | ||||||||| |||||||| |||||||||||||||||||    
T  30801648 cccttgtttgcgagttaaaaaaccatcaaggaaaggagatggagggcttatgttataattttac 30801585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 26629708 - 26629776
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||||||| |||||||| | |||| ||||||||||||    
T  26629708 ccttccccttgtttgggagttaaaaagccaataaggaaaggagatggagggtttattttataattttac 26629776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 26735684 - 26735752
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||||||| |||||||| | |||| ||||||||||||    
T  26735684 ccttccccttgtttgggagttaaaaagccaataaggaaaggagatggagggtttattttataattttac 26735752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 18932532 - 18932464
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||||||| |||||||| |||||||||||||||||||    
T  18932532 ccttccccttgtttgggagttaaaaagccaataaggaaaggagatggagggcttatgttataattttac 18932464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 6616854 - 6616922
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| |||||||| |||||||||||||||||||    
T  6616854 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatggagggcttatgttataattttac 6616922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 437
Target Start/End: Original strand, 37500651 - 37500716
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattt 437  Q
    ||||||||||||||||||||||  | || ||||||||||| ||||| || ||||||||||||||||    
T  37500651 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatgaagggcttatgttataattt 37500716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 6618069 - 6618001
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||| ||||||||||| ||| | || |||| ||| |||||||  |||||||||||||||||||    
T  6618069 ccttccccttatttgggagttaaaaagccaataaggtaaggagatggaaggcttatgttataattttac 6618001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 6620413 - 6620345
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||| |||||||||||||| ||| | || ||| |||| ||||||| | ||||||||||||||||||    
T  6620413 ccttcccattgtttgggagttaaaaagccaataagaaaaggagatggataacttatgttataattttac 6620345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 6922029 - 6921961
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    ||||||||||||||| |||||| ||| | || |||| ||| |||||||| | |||||||||||||||||    
T  6922029 ccttccccttgtttgagagttaaaaagccaataaggtaaggagatggagggtttatgttataattttac 6921961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 24075284 - 24075352
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| |||   || |||||||  |||| ||| |||||||||||||||||||    
T  24075284 ccttccccttgtttgggagttaaaaagacaataaggaaaagagattgagggcttatgttataattttac 24075352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 29691965 - 29692033
Alignment:
Q  373 cttccccttgtttgggagttaga-aaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||| |||||| | |||| |||||||||||||||||||   ||||||| ||||||||||    
T  29691965 cttccccttgtttgagagttaaagaaaccaacaaggaaagaagatggaagacttatgtgataattttac 29692033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 42380926 - 42380858
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || ||| |||| | || ||| |||||| ||||||||||||    
T  42380926 ccttccccttgtttgggagttaaaaagccaataagaaaaggaaattgagggcttatattataattttac 42380858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 9875 - 9807
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| |||||||| |||||||||||||||||||    
T  9875 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatggagggcttatgttataattttac 9807  T

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Target: scaffold0061 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 46648 - 46716
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| |||||||| |||||||||||||||||||    
T  46648 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatggagggcttatgttataattttac 46716  T

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Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 44493 - 44561
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || ||| |||| |||||||| |||||||||||||||||||    
T  44493 ccttccccttgtttgggagttaaaaagccaataagaaaaggagatggagggcttatgttataattttac 44561  T

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Target: scaffold0048; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 72500 - 72566
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||| || |||  ||||||||||||||    
T  72500 ccttccccttgtttgggagttaaaaaaccaacaaggaaaggagatgaagggct--tgttataattttac 72566  T

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Target: scaffold0017 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 152139 - 152071
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| |||||||| |||||||||||||||||||    
T  152139 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatggagggcttatgttataattttac 152071  T

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Target: scaffold0084 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 4383 - 4318
Alignment:
Q  373 cttccccttgtttgggagttaga-aaactaacaaggaaagaagatggagagcttatgttataattt 437  Q
    ||||||||||||||||||||| | |||| |||||||| ||||||||||| |||||||| |||||||    
T  4383 cttccccttgtttgggagttaaagaaaccaacaaggatagaagatggagggcttatgtgataattt 4318  T

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Target: scaffold0136 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 13770 - 13702
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || ||| |||| |||||||| | |||||||||||||||||    
T  13770 ccttccccttgtttgggagttaaaaagccaataagaaaaggagatggagggtttatgttataattttac 13702  T

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Target: scaffold0131 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 4887 - 4819
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| ||||| || |||||||||||||||||||    
T  4887 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatgtagggcttatgttataattttac 4819  T

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Target: scaffold0063 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 4002 - 3934
Alignment:
Q  372 ccttccccttgtttgggagttagaaaactaacaaggaaagaagatggagagcttatgttataattttac 440  Q
    |||||||||||||||||||||| ||| | || |||| ||| |||||||| | |||||||||||||||||    
T  4002 ccttccccttgtttgggagttaaaaagccaataaggtaaggagatggagggtttatgttataattttac 3934  T

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