View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3852_low_12 (Length: 430)

Name: NF3852_low_12
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3852_low_12
NF3852_low_12
[»] chr5 (8 HSPs)
chr5 (159-351)||(31064984-31065176)
chr5 (158-351)||(31066947-31067137)
chr5 (1-174)||(31064276-31064449)
chr5 (357-408)||(31068816-31068867)
chr5 (96-175)||(31066947-31067026)
chr5 (96-174)||(31064984-31065062)
chr5 (160-213)||(37396035-37396088)
chr5 (159-235)||(31064373-31064449)
[»] chr3 (2 HSPs)
chr3 (96-175)||(11232753-11232832)
chr3 (96-174)||(8852788-8852866)
[»] chr8 (1 HSPs)
chr8 (180-237)||(41396841-41396898)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 159 - 351
Target Start/End: Original strand, 31064984 - 31065176
Alignment:
Q  159 cggtagttaactaccgtcgggggtatttgcatcatttagatatgtgtttaagaaactattgagatgagaaaagcaattttcttatctaacatggccttgt 258  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  31064984 cggtagttaactactgtcgggggtatttgcatcatttcgatatgtgtttaagaaactattgaggtgagaaaagcaattttcttatctaacatgaccttgt 31065083  T
Q  259 gtttttgttaaactactatgtcatataccacttggtcctttagttagggaagaagttagttagtgcatttgaacctccaagttcttcatactt 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31065084 gtttttgttaaactactatgtcatataccacttggtcctttagttagggaagaagttagttagtgcatttgaacctccaagttcttcatactt 31065176  T

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Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 158 - 351
Target Start/End: Original strand, 31066947 - 31067137
Alignment:
Q  158 acggtagttaactaccgtcgggggtatttgcatcatttagatatgtgtttaagaaactattgagatgagaaaagcaattttcttatctaacatggccttg 257  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  31066947 acggtagttaactactgtcgggggtatttgcatcatttcgatatgtgtttaagaaactattgaggtgagaaaagcaattttcttatctaacatgaccttg 31067046  T
Q  258 tgtttttgttaaactactatgtcatataccacttggtcctttagttagggaagaagttagttagtgcatttgaacctccaagttcttcatactt 351  Q
    ||||||||||||   |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31067047 tgtttttgttaa---actatgtcatatacgacttggtcttttagttagggaagaagttagttagtgcatttgaacctccaagttcttcatactt 31067137  T

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Target: chr5; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 31064276 - 31064449
Alignment:
Q  1 aagaaatagtcatgtagtaaaaccctcaaattctactgacttaaaaacttaaagggtccaatataataggcccatactaacctattatctaacggaaatt 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31064276 aagaaatagtcatgtagtaaagccctcaagttctactgacttaaaaacttaaagggtccaatataataggcccatactaacctattatctaacggatatt 31064375  T
Q  101 gcttttctcactacaaaagtttcctaaccacacatcaaaatgacgcaaatacctctgacggtagttaactaccg 174  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31064376 gcttttctcacttcaaaagtttcctaaccacacatcaaaatgacgcaaatacctctgacgatagttaactaccg 31064449  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 31068816 - 31068867
Alignment:
Q  357 tgttatttaaaaccttgtatgttgtctggcacaactgtgatcatgaatcatg 408  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  31068816 tgttatttaaaaccttgtatgttgtctggttcaactgtgatcatgaatcatg 31068867  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 31067026 - 31066947
Alignment:
Q  96 aaattgcttttctcactacaaaagtttcctaaccacacatcaaaatgacgcaaatacctctgacggtagttaactaccgt 175  Q
    ||||||||||||||||  ||| |||||| ||| |||| ||| |||||| ||||||||| | ||| |||||||||||||||    
T  31067026 aaattgcttttctcacctcaatagtttcttaaacacatatcgaaatgatgcaaatacccccgacagtagttaactaccgt 31066947  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 31065062 - 31064984
Alignment:
Q  96 aaattgcttttctcactacaaaagtttcctaaccacacatcaaaatgacgcaaatacctctgacggtagttaactaccg 174  Q
    ||||||||||||||||  ||| |||||| ||| |||| ||| |||||| ||||||||| | ||| ||||||||||||||    
T  31065062 aaattgcttttctcacctcaatagtttcttaaacacatatcgaaatgatgcaaatacccccgacagtagttaactaccg 31064984  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 37396088 - 37396035
Alignment:
Q  160 ggtagttaactaccgtcgggggtatttgcatcatttagatatgtgtttaagaaa 213  Q
    |||||||||||||| | ||||||||||||||||||| ||| ||| |||||||||    
T  37396088 ggtagttaactaccattgggggtatttgcatcatttcgatgtgtttttaagaaa 37396035  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 31064449 - 31064373
Alignment:
Q  159 cggtagttaactaccgtcgggggtatttgcatcatttagatatgtgtttaagaaactattgagatgagaaaagcaat 235  Q
    ||||||||||||| |||| | ||||||||| |||||| ||| |||| ||| |||||| ||||  |||||||||||||    
T  31064449 cggtagttaactatcgtcagaggtatttgcgtcattttgatgtgtggttaggaaacttttgaagtgagaaaagcaat 31064373  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 11232832 - 11232753
Alignment:
Q  96 aaattgcttttctcactacaaaagtttcctaaccacacatcaaaatgacgcaaatacctctgacggtagttaactaccgt 175  Q
    ||||||||||||||||   ||||||||||||| || ||||  |||||||||||||| || ||  ||||||||||||||||    
T  11232832 aaattgcttttctcacattaaaagtttcctaaacatacattgaaatgacgcaaatatctttggtggtagttaactaccgt 11232753  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 8852788 - 8852866
Alignment:
Q  96 aaattgcttttctcactacaaaagtttcctaaccacacatcaaaatgacgcaaatacctctgacggtagttaactaccg 174  Q
    ||||||||||||||||   |||||||| |||| || ||||  |||||||||||||| || ||  |||||||||||||||    
T  8852788 aaattgcttttctcacattaaaagttttctaaacatacattgaaatgacgcaaatatctttggtggtagttaactaccg 8852866  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 41396841 - 41396898
Alignment:
Q  180 ggtatttgcatcatttagatatgtgtttaagaaactattgagatgagaaaagcaattt 237  Q
    ||||||||||||||||  || | |||||| |||||| |||| ||||||||||||||||    
T  41396841 ggtatttgcatcatttgaatgtctgtttaggaaacttttgatatgagaaaagcaattt 41396898  T

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