View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_low_14 (Length: 424)
Name: NF3852_low_14
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 46838583 - 46838179
Alignment:
| Q |
1 |
aaaccacaaaagccctgcacacagatcacgagcaccatctacgcattcacaacagttcctcctgnnnnnnnnnnnnnnnnngaatgtgttagaaagacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46838583 |
aaaccacaaaagccctgcacacagatcacgagcaccatctacgcattcacaacagttcctcctgaaaaataaaaatgaaaagaatgtgttagaaagacca |
46838484 |
T |
|
| Q |
101 |
tacaatgtg--aacaaatatataacattagaagcatttataagcatatcaccgttggggtggagaacttggccggttatgtaagaggagcattggttgga |
198 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46838483 |
tacaatgtgtgaacaaatatataacattagaagcatttataagcatatcaccgttggggtggagaacttggccagttatgtaagaggagcattggttgga |
46838384 |
T |
|
| Q |
199 |
agcaagaaacacaaaagagggagcaacctcaacaggctgtccagccctcttcattggcacatcagaaccaaattgagcagtcttttcctcattgaaggaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46838383 |
agcaagaaacacaaaagagggagcaacctcaacaggttgtccagccctcttcattggcacatcagaaccaaattgagcagtcttttcctcattgaaggaa |
46838284 |
T |
|
| Q |
299 |
gctggtattaatggagtccaaataggtccaggtgcaaccccattcactcttatacctttgctcacaagctgaagtgaaagtgctctggtaaaagccacaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46838283 |
gctggtattaatggagtccaaataggtccaggtgcaaccccattcactcttatacctttgctcacaagctgaagtgaaagtgctctggtaaaagccacaa |
46838184 |
T |
|
| Q |
399 |
tggca |
403 |
Q |
| |
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||||| |
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| T |
46838183 |
tggca |
46838179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 179 - 399
Target Start/End: Original strand, 36832129 - 36832349
Alignment:
| Q |
179 |
taagaggagcattggttggaagcaagaaacacaaaagagggagcaacctcaacaggctgtccagccctcttcattggcacatcagaaccaaattgagcag |
278 |
Q |
| |
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|||||||| ||||||||||| |||||||| ||| | || ||||||||||||| |||||| ||||| || ||||| ||||| | | |||||||||||||| |
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| T |
36832129 |
taagaggaacattggttggaggcaagaaagacataggatggagcaacctcaataggctgaccagctcttttcataggcacttgaccaccaaattgagcag |
36832228 |
T |
|
| Q |
279 |
tcttttcctcattgaaggaagctggtattaatggagtccaaataggtccaggtgcaaccccattcactcttatacctttgctcacaagctgaagtgaaag |
378 |
Q |
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| | |||||| ||||| || |||||||| ||||| ||||| || ||||||||||| || ||||| || |||||||| |||||||| ||||||||||| || |
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| T |
36832229 |
tttcttcctccttgaaagatgctggtatcaatggtgtccatatgggtccaggtgccactccattgacccttatacccttgctcaccagctgaagtgatag |
36832328 |
T |
|
| Q |
379 |
tgctctggtaaaagccacaat |
399 |
Q |
| |
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| | || ||||| |||||||| |
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| T |
36832329 |
tccccttgtaaatgccacaat |
36832349 |
T |
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