View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_low_16 (Length: 412)
Name: NF3852_low_16
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 4938911 - 4939313
Alignment:
| Q |
19 |
ctttctacccctatattttcgagaataatgtgcatagcatgatatgatatgtattaccctcctcgacgactccatccatttgttggacatcttgtgaccc |
118 |
Q |
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| T |
4938911 |
ctttctacccctatattttcgagaataatatgcatagcatgatatgatatgtattaccctcctcgacgactccatccatttgttggacatcttgtgaccc |
4939010 |
T |
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| Q |
119 |
attcattcattgttcaaaccatggagcactcaattcgtcgaattccactttcaacccaaccatatattcagagtccatgtcttcttcatccctgtatcta |
218 |
Q |
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| T |
4939011 |
attcattcattgttcaaaccatggagcactcaattcgtcgaattccactttcaacccaaccatatattcagagtccatgtcttcttcttctctgtatcca |
4939110 |
T |
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| Q |
219 |
aatccatcaccttcagaatcaataatatctaaggaaagagttaacgtcattaccacttgcatcactcccctcctctccccaaaaaggcatgt------cc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
4939111 |
aatccatcaccttcagaatcaataatatctaaggaaagagttaacgtcattaccacttacatcactcccctcctctccccaaaaaggcatgtccgcaacc |
4939210 |
T |
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| Q |
313 |
gcaagccaagcaactgtaacacgcacatctcatcatacaaggaagttaaagccttattttt---gtggtcagcaatgtcccactaagtacttgtttttca |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4939211 |
gcaagccaagcaactgtaacacgcacatctcatcatacaaggaagttaaagccttatttttgtggtggtcagcaatgtcccactaagtacttgtttttca |
4939310 |
T |
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| Q |
410 |
ttc |
412 |
Q |
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| T |
4939311 |
ttc |
4939313 |
T |
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