View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3852_low_17 (Length: 359)

Name: NF3852_low_17
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3852_low_17
NF3852_low_17
[»] chr4 (4 HSPs)
chr4 (16-345)||(54396567-54396896)
chr4 (15-248)||(23587525-23587758)
chr4 (15-248)||(23596377-23596610)
chr4 (174-248)||(35132750-35132824)
[»] chr7 (16 HSPs)
chr7 (121-248)||(8102916-8103043)
chr7 (100-248)||(39985874-39986022)
chr7 (178-248)||(7877525-7877595)
chr7 (19-251)||(8017202-8017434)
chr7 (127-248)||(8602229-8602350)
chr7 (128-248)||(8590894-8591014)
chr7 (174-254)||(10494160-10494240)
chr7 (174-245)||(17260543-17260614)
chr7 (178-239)||(8382677-8382738)
chr7 (174-254)||(13333242-13333322)
chr7 (202-245)||(6789842-6789885)
chr7 (174-248)||(3147574-3147648)
chr7 (115-245)||(8585501-8585631)
chr7 (178-248)||(8636135-8636205)
chr7 (205-251)||(8659696-8659742)
chr7 (205-254)||(1301797-1301846)
[»] chr2 (6 HSPs)
chr2 (112-248)||(17716485-17716621)
chr2 (37-281)||(5445510-5445754)
chr2 (179-255)||(12234996-12235072)
chr2 (181-248)||(12245198-12245265)
chr2 (202-251)||(7542556-7542605)
chr2 (178-248)||(16657309-16657379)
[»] chr1 (1 HSPs)
chr1 (178-251)||(4678347-4678420)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 54396567 - 54396896
Alignment:
Q  16 ccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396567 ccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaac 54396666  T
Q  116 cataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396667 cataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcatt 54396766  T
Q  216 gaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaatttcc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396767 gaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaatttcc 54396866  T
Q  316 tctgctgcaaatttcttctcttcacctttg 345  Q
    ||||||||||||||||||||||||||||||    
T  54396867 tctgctgcaaatttcttctcttcacctttg 54396896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 23587758 - 23587525
Alignment:
Q  15 accttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaa 114  Q
    |||||| ||||||||||| || |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||| | |    
T  23587758 accttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgcttgtagctttcttatcaaga 23587659  T
Q  115 ccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcat 214  Q
    ||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| |||||||||||||| ||||| |    
T  23587658 ccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgt 23587559  T
Q  215 tgaaataagcaggaacagtaacaacagcattctt 248  Q
    |||| |||||||| ||||| ||||| ||||||||    
T  23587558 tgaagtaagcaggcacagttacaacggcattctt 23587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 23596610 - 23596377
Alignment:
Q  15 accttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaa 114  Q
    |||||| |||||||||||||| |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||| | |    
T  23596610 accttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaaga 23596511  T
Q  115 ccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcat 214  Q
    ||||||||||| || |||||||| ||||| |||||||| |||| |||||| |  || |||||  |||||||||| || |||||||||||||| ||||| |    
T  23596510 ccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagtagcttgacgttgtgaatcgt 23596411  T
Q  215 tgaaataagcaggaacagtaacaacagcattctt 248  Q
    |||| || ||||| || || ||||| ||||||||    
T  23596410 tgaagtatgcaggcacggttacaacggcattctt 23596377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 35132750 - 35132824
Alignment:
Q  174 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 248  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 8102916 - 8103043
Alignment:
Q  121 gcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaat 220  Q
    ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |  ||| ||||||||||||| || |||||||| |||||||||||||| |    
T  8102916 gcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagt 8103015  T
Q  221 aagcaggaacagtaacaacagcattctt 248  Q
    ||||||| ||||| || || ||||||||    
T  8103016 aagcagggacagtgacgacggcattctt 8103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 248
Target Start/End: Original strand, 39985874 - 39986022
Alignment:
Q  100 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagctt 199  Q
    |||||||| || | |||||||||||| ||||||||||| |||||||| ||||| | ||  ||||| | ||| | |||| | |||||||| || |||||||    
T  39985874 gctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagctt 39985973  T
Q  200 gacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 248  Q
    |||| || || ||||| || |||||||| ||||||||||||||||||||    
T  39985974 gacgctgggagtcattaaagtaagcagggacagtaacaacagcattctt 39986022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 7877595 - 7877525
Alignment:
Q  178 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 248  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 8017434 - 8017202
Alignment:
Q  19 tcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccat 118  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||||||||| || | ||| ||||  |||||    || | ||| || || || |  || |    
T  8017434 tcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaagatcaacacattcttctcgccaacacttgtagcctttttgtcaagtccgt 8017335  T
Q  119 aagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaa 218  Q
    | ||||| || ||||| || ||||| || ||||| ||||| ||||| |  || | |||  |||| ||||| || || |||||||| || |||||||||||    
T  8017334 acgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaa 8017235  T
Q  219 ataagcaggaacagtaacaacagcattcttcac 251  Q
     ||||| ||||| |||||||| |||||||||||    
T  8017234 gtaagctggaactgtaacaacggcattcttcac 8017202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 248
Target Start/End: Original strand, 8602229 - 8602350
Alignment:
Q  127 gcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcag 226  Q
    ||||| ||||| |||||||| || |||| ||  ||||| | ||| | ||| |||||||||||||| || ||||  || ||||||||||| |||||||| |    
T  8602229 gcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccg 8602328  T
Q  227 gaacagtaacaacagcattctt 248  Q
    | ||||||||||| ||||||||    
T  8602329 gcacagtaacaactgcattctt 8602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 8590894 - 8591014
Alignment:
Q  128 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 227  Q
    |||| ||||| || |||||||| |||| ||  |||||||| || | |||  ||||||||||||| |||||||  |  ||||||||||| |||||||| ||    
T  8590894 cagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctgg 8590993  T
Q  228 aacagtaacaacagcattctt 248  Q
     ||||||||||| ||||||||    
T  8590994 cacagtaacaactgcattctt 8591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 10494240 - 10494160
Alignment:
Q  174 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 254  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactgg 10494160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  174 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 245  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  178 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 239  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 13333322 - 13333242
Alignment:
Q  174 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 254  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| |||||||| |||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattcttgactgg 13333242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  202 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 245  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 3147574 - 3147648
Alignment:
Q  174 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 248  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 8585631 - 8585501
Alignment:
Q  115 ccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcat 214  Q
    ||||| ||||| || |||||||| || ||||| || |||||||  ||||| |  || | ||| |||||||||||  | || ||||  || ||||||||||    
T  8585631 ccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcat 8585532  T
Q  215 tgaaataagcaggaacagtaacaacagcatt 245  Q
    ||||||||||||| ||||| ||||| |||||    
T  8585531 tgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 8636205 - 8636135
Alignment:
Q  178 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 248  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||  || ||||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattctt 8636135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 8659696 - 8659742
Alignment:
Q  205 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 251  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttcac 8659742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 1301797 - 1301846
Alignment:
Q  205 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 254  Q
    ||||||||||||||||  ||||| |||||||||||||||||  |||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactgg 1301846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 248
Target Start/End: Complemental strand, 17716621 - 17716485
Alignment:
Q  112 aaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaat 211  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||  || |||||||| |  ||||||     
T  17716621 aaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaa 17716522  T
Q  212 cattgaaataagcaggaacagtaacaacagcattctt 248  Q
     ||| || |||||||| ||||||||||| ||||||||    
T  17716521 aattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 281
Target Start/End: Complemental strand, 5445754 - 5445510
Alignment:
Q  37 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 136  Q
    ||||||||||| |||||||| || |  ||||| | |||||| ||||  || |||| |||| |   |||||| ||||||||||||||||| ||||| ||||    
T  5445754 gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag 5445655  T
Q  137 taggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaac 236  Q
    ||||||| || || ||||||| |||||| ||||| | |||    || ||||| || |||||||| |  || || |  ||||| || ||||||||||| |     
T  5445654 taggctcgttgatgatcctcatcacattaaaaccggcaatttttcctgcatcatttgtagcttgtctctgtgagttgttgaagtaggcaggaacagtgat 5445555  T
Q  237 aacagcattcttcactggatgaccaagaaaagcttcagcaacttc 281  Q
    ||||||||| ||||||  |||||| | | ||| ||||||||||||    
T  5445554 aacagcattgttcacttcatgacccaaataagtttcagcaacttc 5445510  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 12234996 - 12235072
Alignment:
Q  179 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgga 255  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| |||||||| ||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaactgga 12235072  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 12245265 - 12245198
Alignment:
Q  181 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 248  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 7542556 - 7542605
Alignment:
Q  202 cgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 251  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||| ||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcac 7542605  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 16657379 - 16657309
Alignment:
Q  178 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 248  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 4678420 - 4678347
Alignment:
Q  178 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 251  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcac 4678347  T

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