View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_low_19 (Length: 346)
Name: NF3852_low_19
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_low_19 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 82 - 207
Target Start/End: Original strand, 40889473 - 40889598
Alignment:
| Q |
82 |
acttgattctgcacacaaaagaaccttactaacccctttctacttttcaaataaaagtaaatcatataactatgctattggtctcaggtgttgcgttagt |
181 |
Q |
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| T |
40889473 |
acttgattctgcacacaaaagaaccttactaacccctttctacttttcaaataaaagtaaatcatataactatgctattggtatcaggtgttgcgttagt |
40889572 |
T |
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| Q |
182 |
agaataggtaagactagtttaccact |
207 |
Q |
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| T |
40889573 |
agaataggtaagactagtttaccact |
40889598 |
T |
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Target: scaffold0221 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 25160 - 25202
Alignment:
| Q |
267 |
gaacaagtagagtatactagggcgcttgagagaaccacgtcga |
309 |
Q |
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| T |
25160 |
gaacaagtagagtatactagggcgcttgagagaaccatgtcga |
25202 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 11593117 - 11593153
Alignment:
| Q |
208 |
cttcgaattgggagggcgatcctcccggtgaactgac |
244 |
Q |
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| T |
11593117 |
cttcgaattgggagggcgatcctcccaatgaactgac |
11593153 |
T |
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