View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3852_low_20 (Length: 330)

Name: NF3852_low_20
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3852_low_20
NF3852_low_20
[»] chr3 (11 HSPs)
chr3 (16-330)||(36810804-36811120)
chr3 (24-327)||(27005559-27005862)
chr3 (24-140)||(36875764-36875880)
chr3 (26-330)||(33714644-33714948)
chr3 (24-330)||(37580610-37580913)
chr3 (24-139)||(33396702-33396817)
chr3 (24-131)||(33708807-33708914)
chr3 (254-330)||(37587571-37587647)
chr3 (24-141)||(33093717-33093834)
chr3 (254-330)||(33708991-33709067)
chr3 (232-312)||(36875602-36875682)
[»] chr7 (1 HSPs)
chr7 (24-327)||(18724138-18724446)
[»] chr4 (4 HSPs)
chr4 (258-324)||(8184051-8184117)
chr4 (254-324)||(8187108-8187178)
chr4 (32-130)||(547119-547217)
chr4 (256-296)||(1548443-1548483)
[»] chr2 (1 HSPs)
chr2 (250-321)||(32785785-32785856)
[»] chr8 (1 HSPs)
chr8 (256-324)||(18315292-18315360)
[»] chr1 (1 HSPs)
chr1 (24-56)||(52082861-52082893)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 36810804 - 36811120
Alignment:
Q  16 attcagtagtataccatcaagtgaagtctctccatttggctaaaaattcacgtttgcaagatgaagacatcaagatgtttgctttcatgttccccaacat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  36810804 attcagtagtataccatcaagtgaagtctctccatttggctaaaaatttacgtttgcaagaagaagacatcaagatgtttgctttcatgttccctaacat 36810903  T
Q  116 gcaacttctggatttgagctcttgccattgcataactgaaatagatat--atatatagtttttaagagatgtcataacattaagcatttgaactttgcct 213  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  36810904 gcaacttctggatttgagctcttgccattgcatatctgaaatagatatatatatatagtctttaagagatgtcttaacattaagcatttgaactttgcct 36811003  T
Q  214 tctgctcatgggctaacttattttcgatcaaccatgaagcttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgc 313  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36811004 tctgctcatgggctaatttattttctatcaaccatgaagcttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgc 36811103  T
Q  314 aatctcaaagatttgcc 330  Q
    |||||||||||||||||    
T  36811104 aatctcaaagatttgcc 36811120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 327
Target Start/End: Original strand, 27005559 - 27005862
Alignment:
Q  24 gtataccatcaagtgaagtctctccatttggctaaaaattcacgtttgcaagatgaagacatcaagatgtttgctttcatgttccccaacatgcaacttc 123  Q
    |||||| ||||||||||||||||| |||||||| | ||| |||||||| |||||||||| || || ||||||||||| |||||||| |||||||||||||    
T  27005559 gtatacaatcaagtgaagtctctctatttggctgacaatccacgtttgaaagatgaagatattaacatgtttgctttaatgttccctaacatgcaacttc 27005658  T
Q  124 tggatttgagctcttgccattgcataactgaaatagatatatatatagtttttaagagatgtcataacattaagcatttgaactttgccttctgctcatg 223  Q
    | ||| ||     |||| ||| |||| || |||||| |||  ||| ||| || |||||||||| |||||||| |||||||||| |||| |||||||||      
T  27005659 ttgatgtgcatcgttgcaattccatatctcaaataggtattgatacagtcttaaagagatgtcctaacattaggcatttgaaccttgctttctgctcaca 27005758  T
Q  224 ggctaacttattttcgatcaaccatgaagcttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaag 323  Q
    |||||| | |||||| ||||| |||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||| | |||| |||| ||||||||||    
T  27005759 ggctaattcattttccatcaaacatgaagcatccaaactggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaaag 27005858  T
Q  324 attt 327  Q
    ||||    
T  27005859 attt 27005862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 36875880 - 36875764
Alignment:
Q  24 gtataccatcaagtgaagtctctccatttggctaaaaattcacgtttgcaagatgaagacatcaagatgtttgctttcatgttccccaacatgcaacttc 123  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| | ||| || |||||||||||||    
T  36875880 gtataccatcaactgaagtctctccatttggctaacaattcacatttgcaagatgaagacatcaacatgtttgcttttacgtttcctaacatgcaacttc 36875781  T
Q  124 tggatttgagctcttgc 140  Q
    | |||||||||||||||    
T  36875780 ttgatttgagctcttgc 36875764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 330
Target Start/End: Original strand, 33714644 - 33714948
Alignment:
Q  26 ataccatcaagtgaagtctctccatttggctaaaaattcacgtttgcaagatgaagacatcaagatgtttgctttcatgttccccaacatgcaacttctg 125  Q
    ||||||||| ||||||||||||||||||||| | |||||| |||||||||||||| ||||||| | ||||||||| ||||| || |  |||||| ||||     
T  33714644 ataccatcaggtgaagtctctccatttggctcacaattcaggtttgcaagatgaacacatcaaaaggtttgctttaatgtttccaagtatgcaatttctt 33714743  T
Q  126 gatttgagctcttgccattgcataactgaaatagatatatatatagtttttaagagatgtcataacattaagcatttgaactttgccttctgctcatggg 225  Q
    ||||||  | |||||| || |||| |||||| || |||   || ||| || || |||||   |||  ||| |||||||||||||||||||| | ||        
T  33714744 gatttgtacgcttgccgttacatatctgaaaaagctattagtaaagtgttaaatagatgctgtaagtttaggcatttgaactttgccttctacccacaac 33714843  T
Q  226 ctaacttattttcgatcaaccatgaagcttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaagat 325  Q
    ||||  |||||| |||||||  ||||| |||||||||||||||| ||||||||||  | |||||||||||| || | ||| ||||||| || |||||||     
T  33714844 ctaagctatttttgatcaactttgaagtttccaaactggaggtgctgaacttgtcaaactcaagaattgatgatggcgcattgtatgcgatttcaaagag 33714943  T
Q  326 ttgcc 330  Q
    |||||    
T  33714944 ttgcc 33714948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 330
Target Start/End: Original strand, 37580610 - 37580913
Alignment:
Q  24 gtataccatcaagtgaagtctctccatttggctaaaaattcacgtttgcaagatgaagacatcaagatgtttgctttcatgttccccaacatgcaacttc 123  Q
    |||||||||||||||||||||||||||||||||   |||||| |||||| ||||||||||||| | |||||||||||| |||| || || ||||||||||    
T  37580610 gtataccatcaagtgaagtctctccatttggcttccaattcatgtttgcgagatgaagacatccacatgtttgctttcctgtttcctaatatgcaacttc 37580709  T
Q  124 tggatttgagctcttgccattgcataactgaaatagatatatatatagtttttaagagatgtcataacattaagcatttgaactttgccttctgctcatg 223  Q
    | |||||||||||||||  || |||   | ||  || |||  ||||||| || |||| ||||| ||| |||| |||||| || |||| |   |||  |      
T  37580710 ttgatttgagctcttgcttttacat---taaagaaggtattgatatagtgttaaagaaatgtcgtaagattaggcattttaaatttgtccggtgccgaca 37580806  T
Q  224 ggctaacttattttcgatcaaccatgaagcttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaag 323  Q
     |||||  ||| || ||||||| |||||||||||||||| ||||| |||||||||||  | |||||||||||| ||| || | ||||||  ||||||| |    
T  37580807 agctaatctatgtttgatcaactatgaagcttccaaactcgaggtattgaacttgtcaaactcaagaattgatgataaagtattgtatgtgatctcaatg 37580906  T
Q  324 atttgcc 330  Q
    |||||||    
T  37580907 atttgcc 37580913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 33396817 - 33396702
Alignment:
Q  24 gtataccatcaagtgaagtctctccatttggctaaaaattcacgtttgcaagatgaagacatcaagatgtttgctttcatgttccccaacatgcaacttc 123  Q
    ||||||||||||||||||||||||||||||||| | |||||||  |||||||||||||||||||  |||||| |||| ||||| || || ||||| ||||    
T  33396817 gtataccatcaagtgaagtctctccatttggcttacaattcacaattgcaagatgaagacatcaccatgttttcttttatgtttcctaatatgcagcttc 33396718  T
Q  124 tggatttgagctcttg 139  Q
    | ||||||||||||||    
T  33396717 ttgatttgagctcttg 33396702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 33708807 - 33708914
Alignment:
Q  24 gtataccatcaagtgaagtctctccatttggctaaaaattcacgtttgcaagatgaagacatcaagatgtttgctttcatgttccccaacatgcaacttc 123  Q
    ||||||||||||||||||||||||||||||||| | |||||| |||| |||||| || ||||||| |  |||||||| ||||| || || ||||||||||    
T  33708807 gtataccatcaagtgaagtctctccatttggctcacaattcaggtttacaagataaacacatcaaaagatttgctttaatgtttcctaatatgcaacttc 33708906  T
Q  124 tggatttg 131  Q
    | ||||||    
T  33708907 ttgatttg 33708914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 37587571 - 37587647
Alignment:
Q  254 ttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaagatttgcc 330  Q
    ||||||||||||||| ||||||||||| || |||||||||||| ||| || | ||||||| ||||||||||||||||    
T  37587571 ttccaaactggaggtattgaacttgtcacactcaagaattgatgataaagtattgtatgcgatctcaaagatttgcc 37587647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 33093717 - 33093834
Alignment:
Q  24 gtataccatcaagtgaagtctctccatttggctaaaaattcacgtttgcaagatgaagacatcaagatgtttgctttcatgttccccaacatgcaacttc 123  Q
    ||||||| ||||||||||||||||||||||||||| |||||||   | | | ||| | ||||| | || |||||||||||||| |||||  |||| ||||    
T  33093717 gtataccgtcaagtgaagtctctccatttggctaacaattcacaactactaaatgtaaacatcgatatttttgctttcatgtttcccaatttgcagcttc 33093816  T
Q  124 tggatttgagctcttgcc 141  Q
    | ||||||| ||||||||    
T  33093817 ttgatttgaactcttgcc 33093834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 33708991 - 33709067
Alignment:
Q  254 ttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaagatttgcc 330  Q
    |||||||||||||||| ||||||||||  | |||||||||||| || | ||| |||||||||||||||||| |||||    
T  33708991 ttccaaactggaggtgctgaacttgtcagactcaagaattgatgatggtgcattgtatgcaatctcaaagagttgcc 33709067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 36875682 - 36875602
Alignment:
Q  232 tattttcgatcaaccatgaagcttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatg 312  Q
    ||||||||| ||||  |||| ||||||| ||||||||| |||||||||| || |||||||| ||| ||  |||||||||||    
T  36875682 tattttcgaccaacgttgaaccttccaatctggaggtggtgaacttgtcacactcaagaatcgatgatcaagcactgtatg 36875602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 327
Target Start/End: Original strand, 18724138 - 18724446
Alignment:
Q  24 gtataccatcaagtgaagtctctccatttggctaaaaattcacgtttgcaagatgaagacatcaagatgtttgctttcatgttccccaacatgcaacttc 123  Q
    |||||||||||| |||||||||| ||||||||| | |||||| ||||||||| |||||| ||||| |||| ||||| |||||| || || ||| | ||||    
T  18724138 gtataccatcaaatgaagtctcttcatttggcttacaattcatgtttgcaaggtgaagaaatcaatatgtatgcttacatgtttcctaatatggagcttc 18724237  T
Q  124 tggatttgagctcttgccattgcataactgaa-atagatatatatatagtttttaagagatgtcataacattaagcatttgaactttgccttctgctcat 222  Q
    | |||||||  |||||  || |||||  ||||   || |||   || ||| || |||| ||||  ||| |  | |||||||||||||||||||||| ||     
T  18724238 ttgatttgaattcttgtgatggcatatatgaatgaaggtattggtaaagtgttaaagaaatgttgtaataccaggcatttgaactttgccttctgcccac 18724337  T
Q  223 gggctaacttattttcgatcaaccatgaagcttccaaactggaggt----gttgaacttgtcccattcaagaattgataatagagcactgtatgcaatct 318  Q
      |||||    |||| |||||||  ||||||||||||||| |||||    |||||||||||| || |||||||||||| ||| || ||||||||| ||||    
T  18724338 aagctaagcatttttggatcaactttgaagcttccaaactagaggtgttggttgaacttgtcacactcaagaattgatgataaagtactgtatgcgatct 18724437  T
Q  319 caaagattt 327  Q
    |||||||||    
T  18724438 caaagattt 18724446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 8184051 - 8184117
Alignment:
Q  258 aaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaaga 324  Q
    ||||| ||||||||||||||||| ||| ||||| ||||| ||| |||||| ||||||||||||||||    
T  8184051 aaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaaga 8184117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 8187108 - 8187178
Alignment:
Q  254 ttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaaga 324  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||| ||| | |||| |||||||| |||||||    
T  8187108 ttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaaga 8187178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 547217 - 547119
Alignment:
Q  32 tcaagtgaagtctctccatttggctaaaaattcacgtttgcaagatgaagacatcaagatgtttgctttcatgttccccaacatgcaacttctggattt 130  Q
    |||| ||||||||||||||||||||||||||||| |  |   |||||||  |||||| |||||| ||| ||||||||||||  ||||||| || |||||    
T  547217 tcaattgaagtctctccatttggctaaaaattcatgcataagagatgaaagcatcaaaatgtttccttccatgttccccaatttgcaactgcttgattt 547119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 1548443 - 1548483
Alignment:
Q  256 ccaaactggaggtgttgaacttgtcccattcaagaattgat 296  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  1548443 ccaaactggaggtgttgaacttgtcacatacaagtattgat 1548483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 32785785 - 32785856
Alignment:
Q  250 aagcttccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaa 321  Q
    ||||| ||||||| ||||||||||||||||| ||| ||||||||||| ||  |||||| ||||  |||||||    
T  32785785 aagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 18315292 - 18315360
Alignment:
Q  256 ccaaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaaga 324  Q
    ||||||||||||||||||||||||| ||| ||| | ||||| ||  |||||| ||||  ||||||||||    
T  18315292 ccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaaga 18315360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 52082893 - 52082861
Alignment:
Q  24 gtataccatcaagtgaagtctctccatttggct 56  Q
    ||||||| |||||||||||||||||||||||||    
T  52082893 gtataccctcaagtgaagtctctccatttggct 52082861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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