View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_low_3 (Length: 752)
Name: NF3852_low_3
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-138; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 248 - 730
Target Start/End: Original strand, 5282001 - 5282498
Alignment:
| Q |
248 |
gcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaacttgtagaatccacacaatactatcaaggac----------------- |
330 |
Q |
| |
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| T |
5282001 |
gcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaactcgtagaatc-acataacactatcaatgacactagctaacatgtgac |
5282099 |
T |
|
| Q |
331 |
---tcatatgcaaggcaaatattctgcaccaccctttgaaaaatctgatgtggtataaacaatgttgtctacaacaaacaagtttttgatccaatatctc |
427 |
Q |
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||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5282100 |
gactcatatgcaagccaaatattctgcaccaccgtctgaaaaatctgatgtggtataaacaatgttgcctacaacaaacaagtttttgatccaatatctc |
5282199 |
T |
|
| Q |
428 |
tgaaaaacatcccccagctctcaaaaagatctcggatgtacacatttggaaaaaccatgaattttgtgtcaaatagaagtacacttacgagtgatttatg |
527 |
Q |
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|||||| ||||| ||| ||||||| |||| |||||| ||||| |||| |||||||||||||||||||| |||||| ||||||||| ||||| |||||||| |
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| T |
5282200 |
tgaaaagcatcctccacctctcaagaagagctcggacgtacaaatttagaaaaaccatgaattttgtg-caaatacaagtacactaacgagcgatttatg |
5282298 |
T |
|
| Q |
528 |
ttgtccggaagcgcacttctgtaaacttcggttttcttagcagcgacggtga-gggaaaaatagtgcctttagttcactcaggccggccaacccaaaatt |
626 |
Q |
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| T |
5282299 |
ttgtccggaagcacacttctttaaacttcggttttcttagcaacgaaggtgaggggaaaattagtgctcttagttcactca----ggccaacccaaaatt |
5282394 |
T |
|
| Q |
627 |
atgaaatcagattagtcaaccactccagctggctgctagataattaaaaacaaatgttgtgataaagttgttcttggaatccatatatcctataatattt |
726 |
Q |
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| T |
5282395 |
atgaaatcagaccactcaactactcctgctggctgcaagatagttaaaaacaaatgttgtgataaatttattcttggaatccatatatcttatattattt |
5282494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 328 - 708
Target Start/End: Original strand, 5254995 - 5255381
Alignment:
| Q |
328 |
gactcatatgcaaggcaaatattctgcacc----accctttgaaaaatctgatgtggtataaacaatgttgtctacaacaaacaagtttttgatccaata |
423 |
Q |
| |
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|||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5254995 |
gactcatatgcaagccaactattctgcaaattaaaccctttgaaaaatctgatgtggtataaacaatgttgcttacaacaaacaagtttttgatccaata |
5255094 |
T |
|
| Q |
424 |
tctctgaaaaacatcccccagctctcaaaaagatctcggatgtacacatttggaaaaaccatgaattttgtgtcaaatagaagtacacttacgagtgatt |
523 |
Q |
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| T |
5255095 |
tctctgaaaagcatcccccacccctcaagaagatctcggatgtagacatttggaaaaaccacaaattttgtgtcaaatagaagt--acttacgagcaata |
5255192 |
T |
|
| Q |
524 |
tatgttgtccggaagcgcacttctgtaaacttcggttttcttagcagcgacggtga-gggaaaaatagtgc-------ctttagttcactcaggccggcc |
615 |
Q |
| |
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| T |
5255193 |
tatgttgtctggaagcacactcctgtaaacttctgtttttttagcagtgagggtgaggggaaaaatagggcccttactccttagttcactca----ggcc |
5255288 |
T |
|
| Q |
616 |
aacccaaaattatgaaatcagattagtcaaccactccagctggctgctagataattaaaaacaaatgttgtgataaagttgttcttggaatcc |
708 |
Q |
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|||||||||||||||||||||| | ||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||| ||| |||| |
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| T |
5255289 |
aacccaaaattatgaaatcagaccactcaaccactcctgctggctgcaagattgttaaaaataaatgttgtgataaagttgttcatggcatcc |
5255381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 5281782 - 5281977
Alignment:
| Q |
8 |
aataaagttgattagtagatgtgacaataataaaatgcctctgttttgctttgatcttttaaaccttattaatgtttagcttggaaattnnnnnnnnnnn |
107 |
Q |
| |
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||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| | |||| | |||||||||| || |||| |
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| T |
5281782 |
aataaagttgattagtagacgtaacaataataaaatgcctctgttttgatttgatcttttacatcttagtcatgtttagctcggcaattaaaaaaattta |
5281881 |
T |
|
| Q |
108 |
gactaaattcaaattaagttttgttaatgtaagtgaaaaataaaattcgttagtagcgagaccaaaaatacaattagatacattttccatatcata |
203 |
Q |
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| T |
5281882 |
gactaaattcaaattaatttttgttaatgtaagtgaaaaataaaatacgttattagcgagaccaaaaatacaattaaatacattttccatatcata |
5281977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 201 - 301
Target Start/End: Original strand, 5254852 - 5254954
Alignment:
| Q |
201 |
ataggaactgctgtacgaaggtg--catgacatgtggattcctgaccaagcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatga |
298 |
Q |
| |
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|||||||||| |||||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5254852 |
ataggaactgttgtacgaaggtgtgcatgacttgtggatttccgaccaagcaggttttattgtaaggagtcaagtgttaacctcggagacatgtgaatga |
5254951 |
T |
|
| Q |
299 |
act |
301 |
Q |
| |
|
||| |
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|
| T |
5254952 |
act |
5254954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 5180321 - 5180399
Alignment:
| Q |
223 |
gcatgacatgtggattcctgaccaagcaggttttattgtaaggagtcaagtgttaacctgagagacatgtgaatgaact |
301 |
Q |
| |
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||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5180321 |
gcatgacttgtggatttccgaccaagcaggttttattgtaaggagtcaagtgttaacctcagagacatgtgaatgaact |
5180399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 5254716 - 5254847
Alignment:
| Q |
19 |
ttagtagatgtgacaataataaaatgcctctgttttgctttgatcttttaaaccttattaatgtttagcttggaaattnnnnnnnnnnngactaaattca |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| || |||| ||||| ||||| |
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| T |
5254716 |
ttagtagatgtgacaataataaaatgcctctgt-----tttgatcttttaaatcttactaatgtttagctcggcaattaaaaaaatttagactatattca |
5254810 |
T |
|
| Q |
119 |
aattaagttttgttaatgtaagtgaaaaataaaattc |
155 |
Q |
| |
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|||||| | || |||||||||| | |||||||||||| |
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| T |
5254811 |
aattaattatttttaatgtaagggtaaaataaaattc |
5254847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 429
Target Start/End: Complemental strand, 5440160 - 5440061
Alignment:
| Q |
333 |
atatgcaaggcaaatattctgcaccaccctttgaaaaatctgatg---tggtataaacaatgttgtctacaacaaacaagtttttgatccaatatctctg |
429 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||||||||| ||||| |||||||| ||| | | |||||| |||||||||||||| |||||| |
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| T |
5440160 |
atatgcaagccaaagtttctgcaccacccactgaaaaatctgatgtggtggtagaaacaatgatgtattaagcaaacatgtttttgatccaatgtctctg |
5440061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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