View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_low_5 (Length: 620)
Name: NF3852_low_5
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Complemental strand, 12268200 - 12267596
Alignment:
| Q |
1 |
aggtttacactaggtgccccatgtttgtgcttagtcaaaacatcaaatccttgaaagtcaaacataaggattggaataagaatgtgttcggggacattaa |
100 |
Q |
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| T |
12268200 |
aggtttacactaggtgccccatgtttgtgcttagtcaaaacatcaaatccttgaaagtcaaacataaggattggaataagaatgtgttcggggacattaa |
12268101 |
T |
|
| Q |
101 |
catcaatttccaagtaactaaatctaaccttcatcaaattcagagtcaaactaatgatagtgtctacaacaataatcttcttgttgaagagaaagttgtg |
200 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268100 |
catcaatttccaagtaactgaatacaaccttcatcaaattcagagtcaaactaatgatagtgtctacaacaataatcttcttgttgaagagaaagttgtg |
12268001 |
T |
|
| Q |
201 |
gatagaatcaaatccaaattgacaactttgaaggcctctttaatttctatagtgggaagggttcaagttattagattttaattcatagcatgagtatcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12268000 |
gatagaatcaaatccaaattgacaactttgaaggcatctttaatttctatagtgggaagggttcaagttattagattttaattcatagtatgagtatcta |
12267901 |
T |
|
| Q |
301 |
tagctttgtcatttattcattgtgtgatctgatggcattgaactggaaggaggaacaaatgatttccaaacattcttagccctaggctgcttattcaatg |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12267900 |
tagctttgtcatttattcattgcgtgatctgatggcattgaactggaaggaggaacaaatgatttccaaacattcttagccctaggctgcttatacaatg |
12267801 |
T |
|
| Q |
401 |
gaggattttgaaacatgtaagcatccttataaaacatctctccattggttgatttgttccatgcgtacattttacaaaatagaaaagnnnnnnngatgag |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12267800 |
gaggattttgaaacatgtaagcatccttataaaacatctcaccattggttgatttgttccatgcgtacattttacaaaatagaaaagaaaaagagatgag |
12267701 |
T |
|
| Q |
501 |
gataaaccatttctgattattaatcaaatcttcgcctatattctatactctcttttattcttgacctatattctctatgctcnnnnnnnctcagaaggtt |
600 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12267700 |
gataaaccatttctgattattaatcaaatcttggcctatattctatactctcttttattcttgacctatattctctatgctctttttttctcagaaggtt |
12267601 |
T |
|
| Q |
601 |
ttatt |
605 |
Q |
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||||| |
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| T |
12267600 |
ttatt |
12267596 |
T |
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