View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_low_6 (Length: 602)
Name: NF3852_low_6
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 43996992 - 43996611
Alignment:
| Q |
19 |
tgaaattggtggttcgaaccaaaataatattgaagttgatagtggtgagaacaatgatagttacaatttagattatgcaatcatcgatttgataataagt |
118 |
Q |
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| T |
43996992 |
tgaaattggtggttccaaccaaaataatattgaagttgatagtggtgagaacaatgatagttacaatttagattatgcaatcatcgatttgatagtaagt |
43996893 |
T |
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| Q |
119 |
gaaataattcactcatgaatatgctttaatttgacactataatactatgatttaaatactcattactcaagtcatgggttataatgcaaccaagtaactt |
218 |
Q |
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| T |
43996892 |
gaaataattcaatgatgaatatgttttaatttgacactataatactatgatttaaatactcattactcaagtcatgggttataatgcaaccaag------ |
43996799 |
T |
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| Q |
219 |
taaacaacgactaatttgaataagtaagagaatataagaacacaattgataattttcaaacaacactgttcatcttcaaccttgtgtcagtgatggtttc |
318 |
Q |
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| T |
43996798 |
taaacaacgactaaattgaataagtaagagaatataagaacacaattgataattttcaaacaacactgttcatcttcaaccttgtgtcagtgatggtttc |
43996699 |
T |
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| Q |
319 |
aacacctagtacagtacaataatatgttnnnnnnnntcaaacaatcattttattcctatcaaatgcttaatcactctcaactcacttt |
406 |
Q |
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| T |
43996698 |
aacacctagtacagtacaataatatgttaaaaaaaatcaaacaaacattttattcctatcaaatacttaatcactctcaactcacttt |
43996611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 521
Target Start/End: Complemental strand, 10617305 - 10617266
Alignment:
| Q |
482 |
tatgtgaaaaatatagtagattagaggggttgtttggtat |
521 |
Q |
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| T |
10617305 |
tatgtgagaaatatagtagattagaggggttgtttggtat |
10617266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 556 - 592
Target Start/End: Complemental strand, 10617231 - 10617195
Alignment:
| Q |
556 |
tattatctattttggaaagtactacaatgcccctatg |
592 |
Q |
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| T |
10617231 |
tattatctgttttggaaagtactacaatgcccctatg |
10617195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 556 - 592
Target Start/End: Original strand, 34411465 - 34411501
Alignment:
| Q |
556 |
tattatctattttggaaagtactacaatgcccctatg |
592 |
Q |
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| T |
34411465 |
tattatctgttttgaaaagtactacaatgcccctatg |
34411501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 556 - 592
Target Start/End: Complemental strand, 28686517 - 28686481
Alignment:
| Q |
556 |
tattatctattttggaaagtactacaatgcccctatg |
592 |
Q |
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| T |
28686517 |
tattacctattttgaaaagtactacaatgcccctatg |
28686481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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