View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3852_low_9 (Length: 471)
Name: NF3852_low_9
Description: NF3852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3852_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 14497113 - 14497283
Alignment:
| Q |
7 |
gcagcacagacaagagtagaaacatcatttagtgaaacattaactaactgaagaaccatgaaattctgcaatcactataaataggaaaaaaggttgaagt |
106 |
Q |
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| T |
14497113 |
gcagcacacacaagagtagaaacatcatttagtgaaacattaactaactgaagaaccatgaaattctgcaatcactataaataggaaaaaaggttgaagt |
14497212 |
T |
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| Q |
107 |
ttcatcatcaatgaaattccaactactcaaaatttattgttcttgcttccatgaatactcattttcatacc |
177 |
Q |
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| T |
14497213 |
ttcatcatcaatgaaattcccactactcaaaatttattgttcttgcttccatgaatactcattttcatacc |
14497283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 324 - 452
Target Start/End: Original strand, 14497445 - 14497573
Alignment:
| Q |
324 |
tttaatttcttggtgtgaattttcagaaattgcattgcatttgcatatacctcatgtccattgctatttgtgtcccttctaacacgtcttcttaattttc |
423 |
Q |
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| T |
14497445 |
tttaatttcttggtgtgaattttcagaaattgcattgcatttgcatatacctcatgtccattgctatttgtgtcccttctaacacgtcttcttaattttc |
14497544 |
T |
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| Q |
424 |
ttccaaatgtattgatagaactagccctt |
452 |
Q |
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| T |
14497545 |
ttccaaatgtgttgatagaacttgccctt |
14497573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 14497365 - 14497408
Alignment:
| Q |
244 |
agtatatttgtttgttaataatgtcttgcttcatttgatgaacc |
287 |
Q |
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| T |
14497365 |
agtatatttggttgttaataatgtcttgcttcatttgatgaacc |
14497408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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