View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3853_high_4 (Length: 308)
Name: NF3853_high_4
Description: NF3853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3853_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 47717282 - 47717010
Alignment:
| Q |
19 |
gtggtatgaatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctag |
118 |
Q |
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| T |
47717282 |
gtggtatggatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaatagagacaacctag |
47717183 |
T |
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| Q |
119 |
aagcagtaattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatatttttctaac |
218 |
Q |
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| T |
47717182 |
aagcagtaattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatatttttctaac |
47717083 |
T |
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| Q |
219 |
atgccttgtacattgtttgaagatatagaagatgataataatgatattgaaatcgctgagtcattgctattca |
291 |
Q |
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| T |
47717082 |
atgccttgtacattgtttgaagatatagaagatgataataatgatattgaaatcgctgagtcattgctattca |
47717010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 47745074 - 47744803
Alignment:
| Q |
19 |
gtggtatgaatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctag |
118 |
Q |
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| T |
47745074 |
gtggtatgaatgcaggataattttgacgacataaaatctacttcataataataagttgtgatggttaacaaagttttgcattcaaaaagagaaaacctag |
47744975 |
T |
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| Q |
119 |
aagcagtaattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatatttttctaac |
218 |
Q |
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| T |
47744974 |
atgcagtaattcaaaaatagacagaaggcaaagaaaaatggaagcc----tttgtacaatgtttgattttaaaaattagatattagcatattttcctaac |
47744879 |
T |
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| Q |
219 |
atgccttgtacattgtttgaagatat---agaagatgataataatgatattgaaatcgctgagtcattgctattca |
291 |
Q |
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| T |
47744878 |
atgccttgtacaatgtttgaagatataaaagaagatgaaaataatgatattgaaatcactgcgtcattgctattca |
47744803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 39 - 291
Target Start/End: Complemental strand, 47712524 - 47712255
Alignment:
| Q |
39 |
ttttgacgacataaaatttacttcata--ataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaag |
136 |
Q |
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| T |
47712524 |
ttttgaagacataaaatctacttcatataataataagttgtgatggttaaca---ttttgcattcaaatagagaaaacctagatgcaataattcaaaaat |
47712428 |
T |
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| Q |
137 |
agacagat-ggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatattttt--------------ctaacatg |
221 |
Q |
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| T |
47712427 |
agaaaaaaagggaaagaaaaatggacgccaatagtcataagtttttttattttaaaaattagatattagcatatttttctatttttactttactaacatg |
47712328 |
T |
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| Q |
222 |
ccttgtacattgtttgaagatatagaag---atgataataatgatattgaaatcgctgagtcattgctattca |
291 |
Q |
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| T |
47712327 |
ccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctattca |
47712255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 47714004 - 47713816
Alignment:
| Q |
21 |
ggtatgaatgcagg--ataattttgacgacataaaatttacttcataataataagt--tgtgatggttaacagagttttgcattcaaatagagaaaacct |
116 |
Q |
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| T |
47714004 |
ggtatgaatgcaggctatagttttgacgacataaaat---cttcataataataagttgtgtgatgattaacaaagcgttgctttcaaatataaaaaacct |
47713908 |
T |
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| Q |
117 |
agaagcag---------taattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagat |
199 |
Q |
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| T |
47713907 |
agatgcagtaatagtaataattcaaaaatagaaagaagggaaagaaaaatgcaagccattagtcataagtgttttgattataaaaattagat |
47713816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 47759371 - 47759276
Alignment:
| Q |
39 |
ttttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaa |
135 |
Q |
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| T |
47759371 |
ttttgacgatttaaaatctacttcataatattaagttgtaatggttaacaaagttttgcattcaaata-aaaaaaactagatgtagtaattcaaaaa |
47759276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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