View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3853_low_1 (Length: 741)
Name: NF3853_low_1
Description: NF3853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3853_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 341 - 725
Target Start/End: Complemental strand, 4069460 - 4069077
Alignment:
| Q |
341 |
ctatacataatttcaaatctgatcaaaacttggcttggcagattttatgtggacaatatccccattagggtatacaagaacaatagcaacattggagtgg |
440 |
Q |
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| T |
4069460 |
ctatacataatttcaaatctgatcaaaacttggcttg-cagattttatgtggacaatatccccattagggtatacaaggacaatagcaacattggagtgg |
4069362 |
T |
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| Q |
441 |
gatacccatcaaaggcaatgcaagtacaagcaagtttatggaatggtgaaaattgggcaacagatggagggaaagccaaaataaattggacaaatgcacc |
540 |
Q |
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| T |
4069361 |
gatacccatcaaaggcaatgcaagtacaagcaagtttgtggaatggtgaaaattgggcaacagatggagggaaagccaaaataaattggacaaatgcacc |
4069262 |
T |
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| Q |
541 |
tttcaaagcaaacttccaaggatttgatgtcagtggatgtcaaagtcaaaccttaattcatccaaattgtgcttctaataactattggtggaatgacaaa |
640 |
Q |
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| T |
4069261 |
tttcaaagcaaacttccaaggatttgatgtcagtggatgtcaaagtcaaaccttaattgatccaaattgtgcttctaataactattggtggaatgaacaa |
4069162 |
T |
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| Q |
641 |
aagttttggcaattggatcctgccggacaaagacaatatgaaaatgtaaagcaaaattatgtgacatatgattattgtaaagata |
725 |
Q |
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| T |
4069161 |
aagttttggcaattggatcctgccggacaaagacaatatgaaaatgtaaagcaaaattatgtgacatatgattattgtaaagata |
4069077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 4069788 - 4069525
Alignment:
| Q |
11 |
cagagaagggaaaccatatgcattacaaaccaatgtatgggcaaatggtgaaggggatagagagcaaaaaatccacctttggtttgatcccacaactgat |
110 |
Q |
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| T |
4069788 |
cagagaagggaaaccatatgcattacaaaccaatgtatgggcaaatggtgaaggggatagagagcaaaaaatccacctttggtttgatcccacaactgat |
4069689 |
T |
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| Q |
111 |
tttcatgactacaaaattctttggaacccacatcaaattgtgtaagatatattcatgcttctttgactcttaaaaatgtaaaaatcatttcttttataaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4069688 |
tttcatgactacaaaattctttggaacccacatcaaattgtgtaagatatattcatgctcctttgactcttaaaaatgtaaaaatcatttcttttataaa |
4069589 |
T |
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| Q |
211 |
ctatataataaacaaacattagtataaaaggtgaacaagtctgaaactacactatattgatttatg |
276 |
Q |
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| T |
4069588 |
ctatataataaacaacccttagtataaaaggtgaacaag--tgaaactacactatattgatttatg |
4069525 |
T |
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