View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3853_low_3 (Length: 340)
Name: NF3853_low_3
Description: NF3853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3853_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 37169008 - 37169328
Alignment:
| Q |
19 |
tattattgatcctaactttatgcttctccannnnnnnctttcaacaatcctcaaagtaaacatgtcgtcaaggataaagcaaagctaacttgatcaacc- |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37169008 |
tattattgatcctaactttatgcttctcctttttttt-ttccaacaatcctcaaagtaaacatgtcgtcaaggataaagcaaagctaacttgatcaacca |
37169106 |
T |
|
| Q |
118 |
--ttacacaatcttctttgtttggccattaataaacactagcagatgcatgaaaaattactagcaggattgaccgttgaatagttgacttactaaacctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37169107 |
ccttacacaatcttctttgtttggccattaataaacactagcagatgcataaaaaattactagcaggattgaccgttgaatagttgacttactaaacctt |
37169206 |
T |
|
| Q |
216 |
tttacagaggcgtttcagtcattatagacaatccctatctcagcctg---------------caaaaaacataaaaagcttcacacaccacagtctgtat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37169207 |
tttacagaggcgtttcagtcattatagacaatccctatctcagcctgcaaaaaaaataaatacaaaaaacataaaaagcttcacacaccacagtctgtat |
37169306 |
T |
|
| Q |
301 |
cacaggctcatgagagtaacct |
322 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
37169307 |
cacacgctcatgagagtaacct |
37169328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University