View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3854_high_4 (Length: 395)
Name: NF3854_high_4
Description: NF3854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3854_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 1909525 - 1909365
Alignment:
| Q |
16 |
aaacttaacccttacatacctttatgtact-tattcatcgattttctatcaaacaannnnnnnatataatcgcataaattttataatatgttccattgtc |
114 |
Q |
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| T |
1909525 |
aaacttaacccttacatacctttatgtactatattcatcgattttctatcaaacaatttttttatataattgcataaattttataatatgttccattgtc |
1909426 |
T |
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| Q |
115 |
ttatggtaaaattatagatttcataagcgacctctttgaatgtgaatgaggaacatcatca |
175 |
Q |
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| T |
1909425 |
ttatggtaaaattatagatttcataagcgacctctatgaatgtgaatgaggaacatcatca |
1909365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 238 - 393
Target Start/End: Complemental strand, 1909302 - 1909147
Alignment:
| Q |
238 |
cacacatgcgtaaaaataaaaatacttgtgtgaacgcacattatcttactagtagagttgatcatatttaaaccgatccaaattaaaactataattaggt |
337 |
Q |
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| T |
1909302 |
cacacatgcgtaaaaataaaaatacttgtgtgaacgcacattatcttattagtagaggtgatcatatttaaaccgatctaaattaaaactataattaggt |
1909203 |
T |
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| Q |
338 |
ctnnnnnnntaaaacacacacaaattttttattcagatcacttttttaaaactatg |
393 |
Q |
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| T |
1909202 |
ctaaaaaaataaaacacacacaaattttttattcatatcacttttttaaaactatg |
1909147 |
T |
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